Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00011 ATGGAGTGGGACAGTGATTCCGATCTCAGCGGAGACGACGACGCTTCCTTTATGCTCAACCATGATGACGATTTCGCCGGACCCCTCCCCTTCCCCGTCCTCCAGACCGCGCCCTGCGGCTTCGTCGTCACCGACGCGCTTGATCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTCACCGGTTATAGTGCAGAAGAAGTGCTCGGTCGCAATTGCCGTTTCTTGCAGTGCAGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCCGAAATTAGAAGATGCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGTCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTCCCAGGTTCTAAGGTTAAGGAATATACTAAATCATCAGATCAATTTCGTTTGGTGCTTTCGTCATTGAATCCGCTTCATGTTGGGGATCGTAATGTTACTCGTGGAGTTTGTGGAATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTGACTCCAAGAGATATTGCATCTGTCAGTTCTGTTTGTAGGCAGTTCTATGAGCTAACAAAAAGCGAAAATCTTTGGAGAATGGTGTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCTTGGAGGAAACTGACTGTTGGAGGTGTGGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACTTTTGTACTGGATCTGAATTCAAGTAATCCGGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACCCTTTCTTGTGTTAATGGTTCTAATTTAGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATCTCTGGACTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCAATGGAGAAACCTGTCTGGAGGGAGATACCAGTAACATGGACTCCACCTTCGCGCCTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTTCGGTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGTTGGAGGTCTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCCCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGACGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTTTCCTTGGCATGCTCTGTTATCTAA 1833 0.4806 MEWDSDSDLSGDDDASFMLNHDDDFAGPLPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMVTGYSAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSKVKEYTKSSDQFRLVLSSLNPLHVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVSSVCRQFYELTKSENLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGVVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRSVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00011 610 FunFam Adagio protein 1 31 158 - -
Vium845g00011 610 SUPERFAMILY Kelch motif 281 499 IPR015915 GO:0005515
Vium845g00011 610 Gene3D - 273 473 IPR015915 GO:0005515
Vium845g00011 610 SUPERFAMILY Kelch motif 439 604 IPR015915 GO:0005515
Vium845g00011 610 FunFam Putative LOV domain-containing protein 476 609 - -
Vium845g00011 610 ProSiteProfiles F-box domain profile. 209 242 IPR001810 GO:0005515
Vium845g00011 610 Pfam Galactose oxidase, central domain 294 344 - -
Vium845g00011 610 CDD F-box_AtADO-like 197 243 - -
Vium845g00011 610 Gene3D - 474 608 IPR015915 GO:0005515
Vium845g00011 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 37 147 IPR035965 -
Vium845g00011 610 Gene3D PAS domain 31 158 - -
Vium845g00011 610 CDD PAS 37 139 IPR000014 -
Vium845g00011 610 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 606 - -
Vium845g00011 610 SUPERFAMILY F-box domain 190 259 IPR036047 GO:0005515
Vium845g00011 610 FunFam Putative LOV domain-containing protein 271 475 - -
Vium845g00011 610 ProSiteProfiles PAS repeat profile. 33 108 IPR000014 -
Vium845g00011 610 Pfam Galactose oxidase, central domain 358 405 - -
Vium845g00011 610 Pfam Kelch motif 518 565 IPR011498 GO:0005515
Vium845g00011 610 Pfam Kelch motif 451 502 IPR011498 GO:0005515
Vium845g00011 610 Pfam PAS domain 38 147 IPR000014 -
Vium845g00011 610 Pfam F-box-like 206 244 IPR001810 GO:0005515
Vium845g00011 610 NCBIfam PAS domain S-box protein 48 146 IPR000014 -
Vium845g00011 610 Gene3D - 194 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00011 Vium-Chr845 100380 105489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00011 33 148 AGC Kinase Gene Family AT5G58140 35.043 1.54e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00011 K12115 - gmx:100802828 1152.12