Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00008 ATGGAGTGGGACAGCAATTCTGATCTCAGCGGCGACGACGACGCCGCTTCCTTCCTCCTCAACGACGACGATGACGACGTCGTCGGGCCCCTCCCCTTTCCCATCCTCCAAACCGCCCCCTGCGGCTTCGTCGTCACCGATGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCCGTTTTCGAGATGGTTACCGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGCCGATTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAGATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGTCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCTGGTTCTATGTTTAAGGAATTTACTAAATCATCAGATCTTTTTCTTTTTGTGCTTTCTTCTTTGAATCCTCTTCTTGTTGGGGATCGTAATGTTACTCGTGGATTTTGTGGTATATTGCATTTAAGTGATGAGGTATTGTCTCTCAAGATACTTTCTCGCTTTACTCCAAGAGATATTGCATCTGTTTGTTCTGTTTGTAGGCTTTTTTATGAGCTAACAAAAATTGAATATCTTTGGAGAATGGTGTGTCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCTTGGAGGAAACTGACTGTTGGAGGTGTTGTTGAACCTTCACGTTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGGGTTGTCTTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTGAATTCAAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGATGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATCTCTGGACTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTTCTTGATCTTTCAATGGAGAAGCCTGTCTGGAGAGAGATACCAGTAGCATGGACTCCACCTTCGCGACTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGATTTCGCTCTAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGTTGGAGGTGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCCCCTCCTAGACTTGATCATGTGGCTGTGACCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGACGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAAGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCTGTCATCTAA 1839 0.4753 MEWDSNSDLSGDDDAASFLLNDDDDDVVGPLPFPILQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSMFKEFTKSSDLFLFVLSSLNPLLVGDRNVTRGFCGILHLSDEVLSLKILSRFTPRDIASVCSVCRLFYELTKIEYLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGVVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVTLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00008 612 CDD PAS 39 141 IPR000014 -
Vium845g00008 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 609 - -
Vium845g00008 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 35 149 IPR035965 -
Vium845g00008 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Vium845g00008 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Vium845g00008 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Vium845g00008 612 Gene3D PAS domain 33 160 - -
Vium845g00008 612 FunFam Putative LOV domain-containing protein 478 611 - -
Vium845g00008 612 Pfam Galactose oxidase, central domain 358 407 - -
Vium845g00008 612 Pfam PAS domain 40 149 IPR000014 -
Vium845g00008 612 Gene3D - 477 610 IPR015915 GO:0005515
Vium845g00008 612 FunFam Putative LOV domain-containing protein 273 477 - -
Vium845g00008 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Vium845g00008 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Vium845g00008 612 NCBIfam PAS domain S-box protein 35 148 IPR000014 -
Vium845g00008 612 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Vium845g00008 612 Gene3D - 197 244 - -
Vium845g00008 612 Gene3D - 274 476 IPR015915 GO:0005515
Vium845g00008 612 FunFam Adagio protein 1 33 160 - -
Vium845g00008 612 Pfam Galactose oxidase, central domain 296 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00008 Vium-Chr845 81146 99049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00008 36 171 AGC Kinase Gene Family AT5G58140 38.298 7.03e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00008 K12115 - gmx:100802828 1155.97