Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00006 ATGTCAACTGCTGCAGTAATTGAGGTTATGATCATAGTTGTGGTGATTTTGGTGAAGATAGGTATTTTGATTTGTGTGTGCAGAAAAAGACATCAGAAGAATGATAGATCAGTATTTTCTGGTTCAAAATTTCTGACTCTGACTATAAATAAATTTCTTAACGACATGGAAAGGGAGAAGCCAATCAGATTCACTGGTCAACAACTAAGGATTGCAACTGATAACTACTCTAACTTGTTGGGGTCAGGAGGTTTTGGAACAGTTTATAAGGGAATTTTCAGTAATGGGACTATTGTTGCAGTGAAGGTTCTGCGAGGGGCTTCAGACAAGAAAATCGAGGAGCAGTTTATGGCAGAAGTGGGAACGATTGGCAGAATTCATCATTTCAATCTTGTTAGACTCTATGGATTTTGCTTTGAAAAAAACCTGATAGCACTGGTGTATGAGTACATGGGTAATGGCTCTCTTGATAGGTATTTGTTCCACGAAAAGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTGGGAACAGCTAGAGGCATTGCTTATTTGCATGAGGAGTGCCAACACAGAATAATCCATTACGACATAAAACCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTAGCCAAACTCTGCAACAGGGACAATACTCATATAACCATGACTGGAGGCAGAGGAACTCCAGGTTATGCTGCACCTGAGCTTTGGATGCCCTTTCCCATAACTCCCAAGTGTGATGTTTATAGTTTTGGCATGCTGCTGTTTGAAATCATAGGCAGAAGAAGAAACATTGATATTAAACTTGCTGAAAGCCAAGAGTGGTTTCCAATATGGGTTTGGGAAAAATTTGATACTGGACAATTGGGGGAGTTGATGACAGCCTGTGGGATAGAGGAGAAAGATAAGAAGATTGCAGAAAGAATGATTAAGATAGCTTTGTGGTGTGTTCAGTATAGGCCAGAAATAAGGCCAATAATGAGTGTTGTGGTGAAAATGCTGGAAGGTTCAGTGGAAGTTCCAGAACCTGACAACCCTTTTCAGCACTTCATGGGTGGGATTACCATTGCTCATCCAGTTCCAATATCACAGACCTATAATACAGCAAGTATTTCATCTGGTTCTTCTGTTATGGTAACAAGCTCCAGCATTGTATGTGCTACTCCTATTATGAGGAAGTACGGCATTGAATTAGCCTCTAGCAATGTGTGA 1242 0.4002 MSTAAVIEVMIIVVVILVKIGILICVCRKRHQKNDRSVFSGSKFLTLTINKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGASDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFEKNLIALVYEYMGNGSLDRYLFHEKKTLGYEKLHEIAVGTARGIAYLHEECQHRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPITPKCDVYSFGMLLFEIIGRRRNIDIKLAESQEWFPIWVWEKFDTGQLGELMTACGIEEKDKKIAERMIKIALWCVQYRPEIRPIMSVVVKMLEGSVEVPEPDNPFQHFMGGITIAHPVPISQTYNTASISSGSSVMVTSSSIVCATPIMRKYGIELASSNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00006 413 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Vium845g00006 413 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Vium845g00006 413 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 354 - -
Vium845g00006 413 SMART serkin_6 74 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00006 413 Gene3D Phosphorylase Kinase; domain 1 49 150 - -
Vium845g00006 413 Pfam Protein kinase domain 78 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00006 413 Gene3D Transferase(Phosphotransferase) domain 1 151 354 - -
Vium845g00006 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vium845g00006 413 FunFam serine/threonine-protein kinase PBS1-like 48 150 - -
Vium845g00006 413 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00006 413 FunFam Putative receptor-like protein kinase 151 352 - -
Vium845g00006 413 CDD STKc_IRAK 80 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00006 Vium-Chr845 67766 69950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00006 63 357 Receptor kinase-like Gene Family AT5G38280 41.914 6.00e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vium845g00006 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00006 - - pvu:PHAVU_009G239500g 733.791