Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00005 ATGAACTTTGTCCACATTGAGAATATTTTGAGGAACATGGAAAGAGAAAAGCCAATCAGGTTTACTGGTGAGCTGCTAAGGGTTGCAACAGATAATTATTCTACATCATTGGGGTCAGGAGGTTTTGGAGAAGTTTATAAAGGAAATTTAAGGGACGGAACAACAGTGGCTGTGAAGGTTCTACGTGCAAATTCTGATAAGAGAATTAAGGAACAGTTTATGGCAGAAGTGGGTACAATTGGAAAAGTTCACCATTTCAACCTTGTTAAGTTGTATGGATTTTGCTTTGAGAAAGACCTGATAGCACTGGTTTATGAGTATATGAGGAATGGATCTCTTGACAAGTATCTGTTTCACGAAAACAAGACTCTGGGATACGAAAAGCTTCATGAGATTGCAGTTGGAACAGCCAGAGGCATTGCATACTTGCATGAAGATTGTGAACACAGAATAGTCCACTATGACATAAAACCTGGAAATATTCTGTTGGACAAGAACTTCAATCCAAAAGTAGCTGATTTTGGATTAGCTAAACTCTGCAACAGGGACAATACTCATATAACAATGACAGGAGGAAGGGGGACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTGACTCACAGGTGTGATGTTTATAGCTTTGGAATGCTGTTATTCGAAATCATTGGCAGGAGAAGAAACCTTGACATTAACCTTCCCCAAAGCGAAGAGTGGTTTCCAGTATGGGCTTGGAAAAGATTTGAGGCTGGAGAATTGGAAGTGTTAATGAATGCTTGTAAGATTGAGGAGAGGCATAAGAAAATGGCAGAAAGAATGGTGAAGGTAGCTTTGTTTTGTGTTCAGTATAGGCCAGAAACAAGGCCAATCATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTTCTAAACCATGTAACCCGTTTCAGCACATGATAGAAGGAACTTTTAGGGGTAATTCTTCTGTCCATGCATCCGGAACTGATGTAAATACAAGTATCACTACCAGTTCTTCTTTCATGGTAACTGAACCAGGCATTGTATATGACATTCCAGACATTGAATTGGCCTCTACCTGA 1095 0.4009 MNFVHIENILRNMEREKPIRFTGELLRVATDNYSTSLGSGGFGEVYKGNLRDGTTVAVKVLRANSDKRIKEQFMAEVGTIGKVHHFNLVKLYGFCFEKDLIALVYEYMRNGSLDKYLFHENKTLGYEKLHEIAVGTARGIAYLHEDCEHRIVHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHRCDVYSFGMLLFEIIGRRRNLDINLPQSEEWFPVWAWKRFEAGELEVLMNACKIEERHKKMAERMVKVALFCVQYRPETRPIMSDVVKMLEGSVEISKPCNPFQHMIEGTFRGNSSVHASGTDVNTSITTSSSFMVTEPGIVYDIPDIELAST 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00005 364 FunFam serine/threonine-protein kinase PBS1-like 5 107 - -
Vium845g00005 364 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 13 311 - -
Vium845g00005 364 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
Vium845g00005 364 ProSiteProfiles Protein kinase domain profile. 31 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00005 364 Pfam Protein tyrosine and serine/threonine kinase 34 301 IPR001245 GO:0004672|GO:0006468
Vium845g00005 364 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
Vium845g00005 364 SMART serkin_6 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00005 364 CDD STKc_IRAK 37 303 - -
Vium845g00005 364 Gene3D Transferase(Phosphotransferase) domain 1 108 313 - -
Vium845g00005 364 Gene3D Phosphorylase Kinase; domain 1 6 107 - -
Vium845g00005 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium845g00005 364 FunFam Putative receptor-like protein kinase 108 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00005 Vium-Chr845 65575 66834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00005 20 321 Receptor kinase-like Gene Family AT5G38280 42.903 1.25e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vium845g00005 PK_Tyr_Ser-Thr 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00005 - - vun:114162625 699.893