Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00004 ATGAGTTTTCGATTTCCTCCTCCTTCTGACGATTTTAACGATTTTCAGACTCAAGCGCAAAACGAGTTTGACCATTTTATGGAATGGACAGTAATAGCGTCTATAGCTTCTGGAGTGGTGGGACTCGTAGCTATTATAGCAATAGTATATGCCATAATTCAATGCTTAAAGAAGGCAGGAGATGCAATTCCCGCATACGCCCAGCTTGGTAGCACAGAGAATGATCATAAAGCATCAAATTCATTTCCTTCAACCAGAGAAATGGAAGTAGTAATAGAACCAGCTTCTACAGTTCAAAATTCGAAAACTGAGTTTGCAACGATGGAAAGATTCCTGAGCAACATCACCAAGGAGAAACCCATCAGATTCTCTCCTGAGGAACTGGATATAATTACATGGAACTACTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAAGGAATATTGTCCAATGGAGAAGATGTGGCTGTCAAAGTAATCAACAGTTTGGACATGGAAATGGAAGAGCAACTAAAAGCAGAAGTTGGAACCCTAGGAAGAACATACCATGTCAATCTGGTGAGGCTTTATGGCTTCTGCTTTCACCGTGACAAGAGAGCTCTTGTTTATGAGTATGTAGAAAATGGGTCTTTGGACAAGCACTTGTTTGGCAGCAAGAATCAAGACATTGAGTTGGGGAAGCTTCTTGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAAGAGTGTCAAAAGAGAATAATTCATTATGATATTAAACCAGAGAATGTTCTTCTTGACATGAAGTTGGAACCAAAGGTTGCAGATTTTGGCCTAGCTAAGCTTTGCAGCAGAGAAAATAACGTTTCAGTAAACACACACTTTAGAGGAACAAGGGGATATGCTGCACCAGAAATGTGGAAGCCTTTTCCAGTGACTCACAAGTGTGACGTTTATAGTTTTGGTATTCTCCTGTTTGAAATGGTTGGGAGGAGAAGGCATTTTGATGATAACTACAGAGAATCACAACAGTGGCTTCCACGATGGACATGGGATATGTTTGAGAATAATGAGTTATCTGTGATGCTTTCATTTTGTGGAATTGAGGAGAAAGACAAGGAGAAAGGTGAGAGAATGTCAAAGGTGGCTCTGTGGTGTGTTCAGTATTCACCTGATGATAGACCTCTTATGAGTACTGTCGTGAAGATGCTTGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGTGTCTGTTAAGCCAAACCTCACTCAAAAAGAAAGTAGTACTGAAGATTCAGATGCTACCCAGTCATGGGAAACAACTTCAAACCCGGAATATGGCTCCAAAATCAAGCGCAATACATTTGAGATCGAAGAACTTGCTTAG 1398 0.4056 MSFRFPPPSDDFNDFQTQAQNEFDHFMEWTVIASIASGVVGLVAIIAIVYAIIQCLKKAGDAIPAYAQLGSTENDHKASNSFPSTREMEVVIEPASTVQNSKTEFATMERFLSNITKEKPIRFSPEELDIITWNYSTILGSGAFGVVYKGILSNGEDVAVKVINSLDMEMEEQLKAEVGTLGRTYHVNLVRLYGFCFHRDKRALVYEYVENGSLDKHLFGSKNQDIELGKLLEIAIGTAKGIAYLHEECQKRIIHYDIKPENVLLDMKLEPKVADFGLAKLCSRENNVSVNTHFRGTRGYAAPEMWKPFPVTHKCDVYSFGILLFEMVGRRRHFDDNYRESQQWLPRWTWDMFENNELSVMLSFCGIEEKDKEKGERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISPPPFPFQNLVSVKPNLTQKESSTEDSDATQSWETTSNPEYGSKIKRNTFEIEELA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00004 465 Gene3D Phosphorylase Kinase; domain 1 94 208 - -
Vium845g00004 465 ProSiteProfiles Protein kinase domain profile. 133 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00004 465 Pfam Protein kinase domain 136 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00004 465 SMART serkin_6 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00004 465 FunFam Putative receptor-like protein kinase 209 411 - -
Vium845g00004 465 SUPERFAMILY Protein kinase-like (PK-like) 115 404 IPR011009 -
Vium845g00004 465 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 27 414 - -
Vium845g00004 465 MobiDBLite consensus disorder prediction 426 450 - -
Vium845g00004 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vium845g00004 465 Gene3D Transferase(Phosphotransferase) domain 1 209 410 - -
Vium845g00004 465 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00004 Vium-Chr845 62276 64630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00004 122 453 Receptor kinase-like Gene Family AT5G38280 39.589 9.53e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vium845g00004 Pkinase 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00004 - - aprc:113852543 721.85