Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00003 ATGTCCGACACCTCTTATACCACGACAGCTAACACCAACAATTCTGACGATGCAGGATTTGTAATTGCCGGTGTCATAGTTGCCATTATTGTGAAGATTGGTATTTGCTTTTGCGTATTTAAAGCATGCCAAAAAAGATATCAGGTTAATGGTGGTTTTAAACAGACAGGAACACCAGCTAAACAATTTATGACACTCACTATGGATAAATTTCTGAATGATATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCAACTGATAATTACTCTTATCACTTGGGGTCAGGAGGTTTTGGGTCTGTTTATAAAGGAAGTTTTAGTAATGGAACCATTATAGCTGTGAAAGTTCTACTTGGTAGTTCTGACAAAATAATTGATGTACAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTTCATCATTTCAATCTAGTTCGTCTATATGGGTTTTGCTTTGAAAGACACTTGAGAGCACTGGTTTACGAGTACATGGTGAATGGCCCGCTTGAGAAGTACCTATTTCATGAAAGCACCTTCTTATCATTCGAAAAGCTCCATGAGATCGCAATTGGTACAGCAAGAGGTATTGCTTACTTGCATGAAGAGTGTCAACAGAGAATAATCCACTATGATATCAAACCAGGAAATATTCTCTTGGATAGGAACTTTTGTCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGACCATACTCATATAACCATGACTGGGGGTAGGGGCACTCCTGGTTATGCTGCACCTGAACTTTGGTTGCCTTTTCCTGTAACTCACAAGTGTGATGTTTACAGCTTTGGTATGCTGTTATTTGAAATCATTGGCAGAAGGAAAAACCATAACATTAACCTTCCAGAAAGTCAGGTTTGGTTTCCAATGTGGGCTTGGGAAAAATTTGCTGCTGAAAAAGTGGGGGAGTTGATAACTTCTTGTGGGATAGACGACAAAGATAGGGAGATTGCAGAAAGAATTGTTAAAGTAGCTTTGTCATGTGTGCAGTATAAGCCAGAAGTAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGTCGAAGTTCCAAACCCTCCAAACCCATTTCAGTACCTGATTGGTTGGGTTCCACCCACTCATGATACTGACACAAATATCAGTTCTGACTCATCATTGGTAACCAAATCTGTCCCTGTACTTGCCACACATGCTATCACCACCGACGAGATTGAATTAGCGTCTGTATAA 1269 0.4027 MSDTSYTTTANTNNSDDAGFVIAGVIVAIIVKIGICFCVFKACQKRYQVNGGFKQTGTPAKQFMTLTMDKFLNDMEREKPIRFTDQQLRIATDNYSYHLGSGGFGSVYKGSFSNGTIIAVKVLLGSSDKIIDVQFMAEVGTIGKVHHFNLVRLYGFCFERHLRALVYEYMVNGPLEKYLFHESTFLSFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFCPKVADFGLAKLCNRDHTHITMTGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIIGRRKNHNINLPESQVWFPMWAWEKFAAEKVGELITSCGIDDKDREIAERIVKVALSCVQYKPEVRPIMSVVVKMLEGSVEVPNPPNPFQYLIGWVPPTHDTDTNISSDSSLVTKSVPVLATHAITTDEIELASV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00003 422 SMART serkin_6 93 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00003 422 Gene3D Transferase(Phosphotransferase) domain 1 170 371 - -
Vium845g00003 422 FunFam serine/threonine-protein kinase PBS1-like 64 169 - -
Vium845g00003 422 FunFam PR5-like receptor kinase 170 372 - -
Vium845g00003 422 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium845g00003 422 SUPERFAMILY Protein kinase-like (PK-like) 83 396 IPR011009 -
Vium845g00003 422 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Vium845g00003 422 Pfam Protein tyrosine and serine/threonine kinase 97 363 IPR001245 GO:0004672|GO:0006468
Vium845g00003 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vium845g00003 422 Gene3D Phosphorylase Kinase; domain 1 67 169 - -
Vium845g00003 422 PANTHER OS07G0415500 PROTEIN 18 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00003 Vium-Chr845 51042 52692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00003 82 378 Receptor kinase-like Gene Family AT5G38280 40.984 1.17e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vium845g00003 PK_Tyr_Ser-Thr 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00003 - - gmx:100305451 628.632