Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium845g00002 ATGGAGAGGCTTGGAAAGCACTTTGATAGAGTATATCATGACTTTGGTATCGAGCCACGGCAATGCATCAAATATACAATATTCATGATGTCTAAACCTTACAGGTTCCTTGACATGTCTCATTCCCGGGCATTCAATCCAAAGGTTGGCATAGATGGAACAATTTTGTTGCAAAAATTTTCTCAAATAAGATCTGAGACTACATCTGTTGGTGTCTCAACATCTTCTCCTCTAGACCCTGCGGAGGAGGAAAGATTTAGAAACCGATGTTGGTTAGAGGCTGCTGGTGGAAAATACAAGGGATGCGTATACAACATTGGAAATGTCACTTCCCAAGATGACTGTGTTGATAGTTACATCCAACAGACACAGGCATCTTCTACTGCTCAACAACAAAATTCAGAAGAAATTGTAAACCTCAAATGCAGAGTAGCTGATGCACTGAATGCTTGCAAGGGCTTTGAAGCTAGTTTGAGACTGCAGGGGAGGACTGATAATGAAAAGAAATGGCCAGATTTAACTACAATGGTGTGTGGCTTGTTTCTGGCACTTTCTTTCTTGAAATATATATATCACCCTTTGGAATGGTTGGCAAAAAAACTTGTTCTGTTTGTAATTGGCTTCCCTAAGGTTCTACTAAGGGCCATTGCATCTATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTAGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGTATCATCATCTTCTTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAAAGGTTGCGATGTCTTCTTTGACTAGCATGGCTCCTCAAAAAGCTGTTATTGCTGAAACTGGGGAACGTGTTGACGTGAATGATGTTAAGATCAACACCATACTTGCAGTCAAGTCGGGTGATGCTATTCCTCTTGATGGAATAGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCTGTGATAAAAGAGTTTGATTCAGTAGTGTTGGCTGGAACCATTAATGTGAATGGATATATAAGTGTGAAAACTACAGTGCTGGCAAAAGACACAGTGGTGGCTAGAATGTCAAAACTTGTTGAAGAGGCCTCTAGCAGAAAATCTCGAACACAAAGATTCATTGATAATTTCGCCAAGTACTATATTCCTGCTGTTGTTTTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGCATTAGAGGTTCCTGATATAAAACCATGGTTTCATCTTGCAATTGTGGTTTTGTTAAGTGCATGTCCTTGTGCTCTCATCCTCTCCACTCCCGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAACAAGTGGGTTACTACTGAAAGGTGGAGATTATATTGAAACACTGTCTGGAATTAAGACAGTGGCTTTTGATAAAACTGGCACAATAACAAGGGGAGAATTCACAGTGGCAGATTTTTCTGTTATAGATGACATTAGCATTGAAACTTTACTGTACTGGGTTTCAAGTATCGAGAGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTCTAATTCTGTCAAGCCAATCCCTGAAAATGTTGAGAATTTTGAAAATTTTGCTGGTGAAGGAGTTTTTGGAACAATTGATGGGAAGAATATCTATATTGGCAAAAGAAGAATCGGTGCTAGGGCTGACTCCGAAAGAGTTGATTGTCAGTTGCAATTTCAAAGCCATGAAATTTCTACCCCGAAACGATACTGTGGGCCGACTCTGGTTGGAGTCTTCAGCTTAGTCGATACTTGCAGATCAGGTGCTTTGGAAGCAATAGAAGAGCTAAAGTTGTTAGGCGTGAGATCTGTCATGCTAACAGGAGATAGCACTCAAGCAGCTTTGTATGTTCAAAGTCAGTTGAACCATGCTCTAGACATTGTACACGCAGAGCTTCTACCTGCAGAAAAGGCAGTGATCATTGAGAATTTGAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATAAATGATGCTCCTGCATTGGCCACAGCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGACAGGCAATGCAATTCTTATGTCGAACGACATCCAAAAGATACCTGAAGCCATTCGGCTTGCAAGGAAAACCACTAGAAAGCTCATTGAGAATGTCATTATTTCAGTTGGCTTCAAGAGTGCTATACTTGCATTGGCAATTGCAGGATACCCTATTGTTTGGCTTGCTGTCATGACTGACGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGAGAAACCAAAACATGAAAGAAAATCTGCAAGTTCTAAATATGGCACCTTCTCGGAAGATCTGACCATGACTCTACTGGACAATGAAAGTAATAACATTAAGAATCAAGGGCTTCTTACCGGTGAAAAATGTGGTAAAGATTGTTGTAAAGACGACACTTATCATGTAGAAACTACAAGCAAGAACGAATCTTCTGGACTTTTGAAGTTGAGCAAGAGAAACCAAAGTGGAAACTCTGTCTCTATTGAGGTGCATATAGTGAAACCTTGCAATGGTTGTTGTCTAAGAAAGGTAAAAACATTTGACGACTCTGCATGCAGAACAAATAATGGTTCTGGTTGTTGCCAAGAGCAATCTAAGACTGAACAATGTGTCACTGGCTCTGATGCCAGAGAAGATGCCAGCATTGCTTCCTTGGAGTCTTATTGCCTTAAGGACAAATCAGAGGATATTCAAGACTTGTCTGAGACAGAAGGGATTCCAAAGTGCTGCAATAAGACATGCTGCAATGATAGTTTTAAAAATATGGCTAGCCTTAGCCAGCCAGAAATTATTATAGAGTGA 2901 0.4043 MERLGKHFDRVYHDFGIEPRQCIKYTIFMMSKPYRFLDMSHSRAFNPKVGIDGTILLQKFSQIRSETTSVGVSTSSPLDPAEEERFRNRCWLEAAGGKYKGCVYNIGNVTSQDDCVDSYIQQTQASSTAQQQNSEEIVNLKCRVADALNACKGFEASLRLQGRTDNEKKWPDLTTMVCGLFLALSFLKYIYHPLEWLAKKLVLFVIGFPKVLLRAIASIKALTLNINILVLLAVCSTAALQDFWEAGIIIFLFSIAQWLETRATHKAKVAMSSLTSMAPQKAVIAETGERVDVNDVKINTILAVKSGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKEFDSVVLAGTINVNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAVVPAALEVPDIKPWFHLAIVVLLSACPCALILSTPVAIFCALTKAATSGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVADFSVIDDISIETLLYWVSSIESKSSHPMAAALVEYGMSNSVKPIPENVENFENFAGEGVFGTIDGKNIYIGKRRIGARADSERVDCQLQFQSHEISTPKRYCGPTLVGVFSLVDTCRSGALEAIEELKLLGVRSVMLTGDSTQAALYVQSQLNHALDIVHAELLPAEKAVIIENLKKDGLTAMIGDGINDAPALATADIGISMGISGSALANETGNAILMSNDIQKIPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGYPIVWLAVMTDVGTCLLVILNSMLILQEKPKHERKSASSKYGTFSEDLTMTLLDNESNNIKNQGLLTGEKCGKDCCKDDTYHVETTSKNESSGLLKLSKRNQSGNSVSIEVHIVKPCNGCCLRKVKTFDDSACRTNNGSGCCQEQSKTEQCVTGSDAREDASIASLESYCLKDKSEDIQDLSETEGIPKCCNKTCCNDSFKNMASLSQPEIIIE 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium845g00002 966 SFLD C1.7: P-type atpase like 458 727 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 324 338 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 598 609 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 698 710 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 475 489 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Vium845g00002 966 PRINTS P-type cation-transporting ATPase superfamily signature 674 693 - -
Vium845g00002 966 SUPERFAMILY Calcium ATPase, transmembrane domain M 226 469 IPR023298 -
Vium845g00002 966 SUPERFAMILY Calcium ATPase, transduction domain A 289 374 IPR008250 -
Vium845g00002 966 ProSitePatterns Hypothetical cof family signature 2. 674 696 - -
Vium845g00002 966 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 100 781 - -
Vium845g00002 966 CDD P-type_ATPase_HM 175 776 - -
Vium845g00002 966 NCBIfam heavy metal translocating P-type ATPase 226 776 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium845g00002 966 Gene3D - 264 378 - -
Vium845g00002 966 Pfam haloacid dehalogenase-like hydrolase 471 688 - -
Vium845g00002 966 ProSitePatterns E1-E2 ATPases phosphorylation site. 477 483 IPR018303 -
Vium845g00002 966 NCBIfam HAD-IC family P-type ATPase 249 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium845g00002 966 SFLD p-type atpase 458 727 IPR044492 -
Vium845g00002 966 Gene3D - 486 606 IPR023299 GO:0000166
Vium845g00002 966 FunFam Copper-transporting ATPase 1, putative 264 378 - -
Vium845g00002 966 Gene3D - 466 725 IPR023214 -
Vium845g00002 966 SUPERFAMILY HAD-like 473 775 IPR036412 -
Vium845g00002 966 FunFam Putative cadmium/zinc-transporting ATPase 3 486 606 - -
Vium845g00002 966 Pfam E1-E2 ATPase 285 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium845g00002 Vium-Chr845 36739 47990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium845g00002 143 899 Primary Pumps ATPases AT4G30110 52.734 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium845g00002 K01534 - gmx:100815324 1328.15