Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8450g00011 ATGGCGACTGTTCCAGGGCAACTTGTGTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTAAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAATTCGTTCAAATTCTCTGGTTTGGCAAACAAGAAAACTGTTACCGTTCAGCCTGTTGGTAAGGATCTATCTGTTTTGTTGGCTACAACAAAGACAAAGAAGCAGAACAAGCCTGCTTCATTGCTCCACAAATCTGTGATGAAGAAGGAGTTCCGTAGGATGGCAAAGGCTGTTGAAAATCAGGTTGCGGATAATTACTACAGGCCTGATCTTAAGAAGGCCGCCCTTGCAAGGTTGAGTGCTGTTAACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAACAGACAGGCCGTGAAGATCTCTGGTAGGAAGTGA 453 0.4636 MATVPGQLVWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNSFKFSGLANKKTVTVQPVGKDLSVLLATTKTKKQNKPASLLHKSVMKKEFRRMAKAVENQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKISGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8450g00011 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vium8450g00011 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vium8450g00011 150 FunFam 60S ribosomal protein L28 5 133 - -
Vium8450g00011 150 Gene3D - 6 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8450g00011 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.028 3.44e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8450g00011 K02903 - gmx:100500189 276.944