Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8440g00002 ATGTCTGGGAACACGGAAGAGCAGCCATTGTTGCCGGACTCCTTTCAGGCAGAAGAGGAGCTGCAAGAAACTGCCTACGAATCCTCCGAGAAGATCGTGGTCGTGGGAATCGACGAGTCCGATAGCGAGGACAATTGGGGGAGAGTGCCTCCTTTCTCATGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGGGACCTTCAGGCCGGAGCTATTGCCGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCAACGGCCATGGGCCTCTTGATCCAGCTCCTCTCTGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTCGCTGAACTCTGCAGGGAAGAGTACCCTGCGTGGGCCCGGATAGTGCTTTGGATCATGGCCGAACTCGCTCTTATTGGCTCTGATATTCAGGAAGTTATTGGAAGCGCTATTGCCATCAGGATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCGGGAGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTAGAGAACTATGGTGTGAGGACACTAGAAGCTCTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTGCTTCTTGGCGTTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCGCACAATGTGTTCTTGCACTCTGCTCTCGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTTGTCTCCTTTATCATAAATATATTTGTGACAACAGTGTTCGCCAAGGGTTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGCAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGACTTTTTCCAATTTTATACATATGGGGTATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTGAGATTAAAGAAGTGGATGAGGGCATTGATTACTCGAAGTTGTGCAATAATCCCAACCATGATAGTTGCTCTTTTATTTGACACCTCCGAGGGATCGTTAGATGTTCTGAATGAGTGGCTCAATGTTCTTCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTATCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCTATGTTCTCAAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGATGGAATTCTTTTCCTCCGAAGTTAACGGTCCCTTGTTTGGCGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTCTTACTATACCTTATATGGAGGGCCATTGCTTTACCTTGGCAAAGCATAATGCGACCAAAGACAAATTGCTCATTCAGAGAGTTAAGTGATCAATCTTTAAATATGCAGAATAGGAAGTGTGGTCCATTTTCTCGCCATTGTTATTAG 1611 0.4699 MSGNTEEQPLLPDSFQAEEELQETAYESSEKIVVVGIDESDSEDNWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWIMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEALFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLANAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIIPTMIVALLFDTSEGSLDVLNEWLNVLQSVQIPFALIPLLYLVSKEQIMGTFRIGYVLKITSWLVAALVIVINGYLLMEFFSSEVNGPLFGAVVGAITAAYVAFLLYLIWRAIAFXPWQSIMRPKTNCSFRELSDQSLNMQNRKCGPFSRHCY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 NCBIfam Nramp family divalent metal transporter 62 431 - -
Vium8440g00002 537 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 43 503 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 Pfam Natural resistance-associated macrophage protein 78 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium8440g00002 537 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8440g00002 Vium-Chr8440 34659 39082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8440g00002 31 502 Inorganic Solute Cotransporters AT2G23150 78.737 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8440g00002 K21398 - gmx:100812381 935.636