Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8437g00001 ATGGGTGGTACTTCTTCACCTTGTGCTTCGTGCAAGTTGTTGAGGCGCCGTTGCTCTCCGGATTGCATCTTTGCTCCTTATTTTCCATCCAACGATCTCTGCAAGTTTGCCATGGTGCACAAGGTCTTTGGCTGCAGCAATATCACCAAAATTCTAAAGAATGTTCCCGTCGAGCAAAGAGGAGATGCAGTGAGGAGTTTAGTTTATGAAGCAAATGCACGAATTAGAAACCCTGTTTATGGTTGTGTTGGAATCATATCTAAGCTAGAAACTCAAGTTTTAGAGTTACAAATGCAGCTTGCAGTAGTTGAGGAAGAAATTCTCAGCATAAAAATGCAGCAAGAATTTATCTTCACCAATGGTGGTACATAA 372 0.4167 MGGTSSPCASCKLLRRRCSPDCIFAPYFPSNDLCKFAMVHKVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIRNPVYGCVGIISKLETQVLELQMQLAVVEEEILSIKMQQEFIFTNGGT 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8437g00001 123 Coils Coil 86 106 - -
Vium8437g00001 123 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vium8437g00001 123 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vium8437g00001 123 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8437g00001 Vium-Chr8437 3606 4121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8437g00001 1 115 AS2 family AT2G30130 70.690 3.20e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium8437g00001 LOB 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8437g00001 - - sind:105163937 176.792