Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8431g00002 ATGCCGCCGAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTTAAGCAATCAGTGCAGCCCAGGGTCGATCCTGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCTATAGTGTGTGAGTTTTATAAAGTCGGGCAATGCGCCAAAGGCTTCAAGTGCAAGTTTTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAAATTGACATTTATAGTGATAAGCGTGACCAGGAAACAATGGAGGACTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAATCTGATTATAATCAGAATAAAGCGACTGACATTGTATGCAAATACTTTTTGGATGCTGTAGAAAAGAAGCAATACGGGTGGTTTTGGGAATGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAAGCTGACAAATTATCAATCGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGAAAACCACGACTCCTATGACTCCCGACTTATTCTATGAATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTAGCCGCACAGCAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCAAATGCTAGCTTGTTTGTGGACGATGCAGAAGCATATGAAAAATACCAGAGAGAACCAGAATATGATGAAACTGAACAGAATGGTAATGGGAACGCTACCCAAGATGGTCCTAGCACCTCAGCCGGTGCTGACGGTGAAGCTCTTGATGACATAGATGATGATGACGATGAGTTGGACTTGGATGAGTTAAATGAATTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATAAAGGAAACGGGAGCTGAAACTCAATCCTGA 1089 0.4307 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRVDPAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSIVCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKSDYNQNKATDIVCKYFLDAVEKKQYGWFWECPNGGKNCHYRHALPPGYVLKSQMKALLEEEADKLSIEEEIENQRAKVKTTTPMTPDLFYEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPEYDETEQNGNGNATQDGPSTSAGADGEALDDIDDDDDELDLDELNELEASLAKTSIQIKETGAETQS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8431g00002 362 MobiDBLite consensus disorder prediction 322 340 - -
Vium8431g00002 362 MobiDBLite consensus disorder prediction 301 316 - -
Vium8431g00002 362 Coils Coil 53 73 - -
Vium8431g00002 362 Coils Coil 246 266 - -
Vium8431g00002 362 Coils Coil 206 228 - -
Vium8431g00002 362 MobiDBLite consensus disorder prediction 345 362 - -
Vium8431g00002 362 Coils Coil 339 359 - -
Vium8431g00002 362 MobiDBLite consensus disorder prediction 292 362 - -
Vium8431g00002 362 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Vium8431g00002 362 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Vium8431g00002 362 SMART c3hfinal6 160 195 IPR000571 GO:0046872
Vium8431g00002 362 Gene3D - 87 203 - -
Vium8431g00002 362 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Vium8431g00002 362 Gene3D - 204 279 - -
Vium8431g00002 362 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Vium8431g00002 362 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Vium8431g00002 362 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium8431g00002 DFRP_C 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8431g00002 - - gmx:100778701 600.897