Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00057 ATGGAACCGCCATTGCAACACCAACCATCACCGCCACCGTCACCACGCTCCCTCACCATCCTCGGGAAATACCAGCTGACGCGCCTCCTCGGGCGTGGAAGCTTCGCCAAGGTCTATCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGATGCTGGCATGGAGCCCCGCATAATCCGCGAGATTGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTTATGGCCACAAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGATACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAACGGCCTTCTCCACACCGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATACTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATTTCCCGGAGAGATTACCAGTTCCCTGACTGGATATCAAAACCGGCACGCTATGTTATATATAAATTACTGGACCCGAACCCAGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCTTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACAAGGCTGTTTGAAACGACGTCGGATGGGGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCTCGCGTGGAGGTGGTGGAGGAGAAGCTTAAGGAAGTGGGTGGGATTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCATTAACGGTGCAATTGCATTGTTGAAAGGAAAGGTGGCTTTAGTGTTCGAGGTGCTTCAGATTGTACCCGATCAGCTTCTTCTGGTGGCCGTGAAGGTCGTGGAGGGTGCGTTAGAGTTTGAGGAGCATCACTGGGGTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGATTCATGA 1320 0.55 MEPPLQHQPSPPPSPRSLTILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELAAGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQNGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMYKKISRRDYQFPDWISKPARYVIYKLLDPNPETRMGLEALFGNPWFKKSLKPETAEESAFGWDNVYVKGCYYEGVKCSGVNAFDIISMSSGLNLTRLFETTSDGGSRREKRFTSSARVEVVEEKLKEVGGILGFKVEAGKAINGAIALLKGKVALVFEVLQIVPDQLLLVAVKVVEGALEFEEHHWGDWKNALQDLVLSWHNDDS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00057 439 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium842g00057 439 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium842g00057 439 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium842g00057 439 SUPERFAMILY Protein kinase-like (PK-like) 20 287 IPR011009 -
Vium842g00057 439 Gene3D Kinase associated domain 1, KA1 310 432 - -
Vium842g00057 439 FunFam Non-specific serine/threonine protein kinase 17 109 - -
Vium842g00057 439 Gene3D Transferase(Phosphotransferase) domain 1 16 305 - -
Vium842g00057 439 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Vium842g00057 439 FunFam Non-specific serine/threonine protein kinase 15 302 - -
Vium842g00057 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vium842g00057 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 379 - -
Vium842g00057 439 Pfam NAF domain 314 371 IPR004041 GO:0007165
Vium842g00057 439 CDD CIPK_C 315 428 - -
Vium842g00057 439 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00057 Vium-Chr842 491885 493525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00057 1 436 CBL-interacting serine-threonine protein kinases AT4G14580 58.770 1.01e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium842g00057 Pkinase 6.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00057 K12761 - gmx:100784173 735.332