Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00056 ATGGCTGGGTTGGAGCTCGTTCCCATAGGTACAATTCTGACATTGGTAACTTCACAAATCTTGAAAACAGCTCAAGCAGCATCTGATGTTCTTGTTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTGAAGGAATTGCAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTGGAAAAGTATAGGAACCGTGGCCGTTTTTACTTATTGATTAAGTGTCGATCAATTGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTACATGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGATTGCAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGTCCCAGATTCAAGTTGTTGACAAGTTAAACCAGGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGTTAGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAAATAAGCAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTTCTGAAAGAAAAGAAAGAGCTGAATGTGTTCTTTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTAGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGGTTCAAGGGAAAAATATATCCCCCCACTCAATTCTTTCCATTGTTCTATTACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAAGCTTGGTTTTACGATGGCAACAGGAAAGACCCAGAAACTAAAGTTGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTCTAAGACAATCTATTGAAGAATGGAGAGAACTTAATTATTGTCTGATAATAAGGTCTATCAGAGAAAATTTGTTATCATCTTCTGACCTGCAAGAATCCTTGACCCAAATGCAGGATCTTGTAAGAAAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATAATGTTATCTCTATCCTCGGGAGCTCTGATGACAAAGAAGTAAAGAGGAAGATTTTGATAACTTTGAAGGATGCTGTTGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCGAGGATGGGATCACGTTCTTTCCTGCTTAGGGAGTGACTCTAGCATTTCCAAGGAAGCAATTGATCTGCTATATGAACTGCTTCAAGAACAATCTGGTTGGAATCAATATCTCTGTAAAAGGCTTTGTGAAAATCGCACTGCAGTTTTGTCCCTTGTTGCCCTTCTAAAGAATCTTTCCAGCCATTCTACCGAAGTTGCCGAAAAGATTTTGACGAAGCTTTTTGAACTAAACGAGGAAACCATTACTATTGCTGCTGATTTTGGCTGGTATAAACCTCTTGTTGATCGCATGATTGAAGGACCAGATTCAAGAATATCAATGGCAAAAGCCATTGTTAATTTGGAGTTGAATGCTTCAAACTTGAAACTCCTTGGCAACGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGAAGCGCTGAATCAAAAGACTTGTCATTGTCAGCCCTGATTAAATTAGCAGGATCTCATGCTAATAAAGGAATTATTGCTACATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACACGGGCATTCATCATCATTAAATGCTCTGAAATCATTGAGAAGCTTTCTTCAAATGGTGATGGAATTTGTTTCTTCGTTGATGGAGAGGGGAAACAGATTGAGTTAGATTCCATCATCACCAAATTACTAGCTTTGCTGCAGAGTTTCAGCTTAGGTCCTAACATACGTAAGCCTGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGATTTGGTTAAGAAAGCAATTCTTGCAGCCAACGGCGTATCTCTAATTCTTCCACTTCTTGATGATCCCGACTCAGAAATCAGAGAGACCTCCATAATTCTACTCTATCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAGGAGAATGATAATGTACAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGGTGATTGAGCTGGGTGGACTTGACGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAGATATTGAGTCACAGCAAGATCTGGTTAAACGCGGAATATACCCTTTGCTTGTAGATTTTCTCAACACTGGTTCGGTCACGGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCGATGAGCACTCCAAAGCTCACAGTTATTCCGAAGCCAACTGGTTGCTGGCTTTTCAGATCATCACGTGTTCCTTTGTGTCCAGCACATGGGAGTGTATGCAGTGTGAACAGCACATTTTGTCTTTTGGAGGCTAAGGCTTTACCTGGCTTGATAAAGCTATTACATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGAATTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGAATAATACAATAAGATCCTTATTGGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTAGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCTAGATCACGTCTTATTGGTTTGACTGGCATGAATATATATGGAGAAAGTCACCTCAGGAGAAAGGCTGCCAAAGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCCATCTCCGGTGTTCTGGAGTGA 3042 0.4106 MAGLELVPIGTILTLVTSQILKTAQAASDVLVGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVEKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLHALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQVVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEASERKERAECVLLDQIIQLLSRADAARDYEEVERQYFERVKVIERYGSREKYIPPLNSFHCSITGAVMEDPVSLCTGTTCERHAIEAWFYDGNRKDPETKVVLEDTTLRSNIPLRQSIEEWRELNYCLIIRSIRENLLSSSDLQESLTQMQDLVRKNSINKDWISIGELTDNVISILGSSDDKEVKRKILITLKDAVEGNTRNKEKVAESRGWDHVLSCLGSDSSISKEAIDLLYELLQEQSGWNQYLCKRLCENRTAVLSLVALLKNLSSHSTEVAEKILTKLFELNEETITIAADFGWYKPLVDRMIEGPDSRISMAKAIVNLELNASNLKLLGNEGVIPPLLEMLSGSAESKDLSLSALIKLAGSHANKGIIATSGGVPLILDLMFSPRTRAFIIIKCSEIIEKLSSNGDGICFFVDGEGKQIELDSIITKLLALLQSFSLGPNIRKPALRALLGICKFETDLVKKAILAANGVSLILPLLDDPDSEIRETSIILLYLFSQHEPEGVVEYLFKPRRLEALIGFLENEENDNVQMAAAGLLANLPKSERELTMKVIELGGLDAIISILKTGKMEAKENALSALFRFTDPTDIESQQDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVIPKPTGCWLFRSSRVPLCPAHGSVCSVNSTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPQRGARVLHENNTIRSLLDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGESHLRRKAAKVLSLLERYSKSSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00056 1013 Gene3D - 863 1009 IPR011989 -
Vium842g00056 1013 SUPERFAMILY RING/U-box 250 330 - -
Vium842g00056 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vium842g00056 1013 Gene3D - 5 124 IPR036537 GO:0007166
Vium842g00056 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 451 495 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 626 667 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Vium842g00056 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Vium842g00056 1013 Coils Coil 127 154 - -
Vium842g00056 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vium842g00056 1013 CDD MLKL_NTD 10 145 - -
Vium842g00056 1013 Coils Coil 62 89 - -
Vium842g00056 1013 SUPERFAMILY ARM repeat 198 555 IPR016024 -
Vium842g00056 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Vium842g00056 1013 Gene3D - 516 846 IPR011989 -
Vium842g00056 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vium842g00056 1013 Gene3D - 341 504 IPR011989 -
Vium842g00056 1013 SUPERFAMILY ARM repeat 470 955 IPR016024 -
Vium842g00056 1013 Coils Coil 197 217 - -
Vium842g00056 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00056 Vium-Chr842 468119 473391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00056 264 968 U-box Gene Family AT1G20780 27.719 6.76e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00056 - - gmx:100783638 1711.04