Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00044 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTCCATGTTGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCATCGTGCCTGCGCCGTCGACGGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTGTGGGGGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGTAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGTTCAAGGTGATGGAATATCATACTCCGTTGGTGCCAATTTCACACCACATGTTCTCACAGTAAATTCTGGCGAGGATGTCACTATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGAGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGCATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTGCTGGTAGCCGCTGGTCCAGTTCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTTCTCCTGTTAATATCATCTCTAGTGAGGAACTAAAAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCAGCTCCTGATGATAGAGATCCTTTACCCGACAAGGAGTCTAATATAAGCCAATCAAACGCTGAGGCTGCATGCTAA 990 0.4697 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAIVPAPSTEGKKKRGRPRKYGPDGKVAVGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPVQGDGISYSVGANFTPHVLTVNSGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSAPDDRDPLPDKESNISQSNAEAAC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00044 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 242 - -
Vium842g00044 329 ProSiteProfiles PPC domain profile profile. 120 262 IPR005175 -
Vium842g00044 329 FunFam AT-hook motif nuclear-localized protein 1-like 125 256 - -
Vium842g00044 329 MobiDBLite consensus disorder prediction 37 56 - -
Vium842g00044 329 Gene3D - 125 258 - -
Vium842g00044 329 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vium842g00044 329 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Vium842g00044 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Vium842g00044 329 MobiDBLite consensus disorder prediction 296 329 - -
Vium842g00044 329 CDD DUF296 124 238 IPR005175 -
Vium842g00044 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 298 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00044 Vium-Chr842 301028 307977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00044 45 313 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 58.156 1.02e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00044 - - gmx:100776862 565.074