Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00043 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTCCATGTTGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCATCGTGCCTGCGCCGTCGACGGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTGTGGGGGCGGTGACGGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGTAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGTTCAAGGTGATGGAATATCATACTCCGTTGGTGCCAATTTCACACCACATGTTCTCACAGTAAATTCTGGCGAGCAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGAGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGCATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGGCTTGCTGGTTTGCTGGTAGCCGCTGGTCCAGTTCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTTCTCCTGTTAATATCATCTCTAGTGAGGAACTAAAAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCAGCTCCTGATGATAGAGATCCTTTACCCGACAAGGAGTCTAATATAAGCCAATCAAACGCTGAGGCTGCATGCTAA 957 0.4734 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAIVPAPSTEGKKKRGRPRKYGPDGKVAVGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPVQGDGISYSVGANFTPHVLTVNSGEQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSAPDDRDPLPDKESNISQSNAEAAC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00043 318 ProSiteProfiles PPC domain profile profile. 107 251 IPR005175 -
Vium842g00043 318 Gene3D - 127 247 - -
Vium842g00043 318 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 231 - -
Vium842g00043 318 MobiDBLite consensus disorder prediction 37 56 - -
Vium842g00043 318 MobiDBLite consensus disorder prediction 285 318 - -
Vium842g00043 318 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vium842g00043 318 SMART AT_hook_2 45 57 IPR017956 GO:0003677
Vium842g00043 318 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 227 IPR005175 -
Vium842g00043 318 CDD DUF296 124 227 IPR005175 -
Vium842g00043 318 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 287 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00043 Vium-Chr842 301028 307978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00043 45 281 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 51.408 2.64e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00043 - - gmx:100776862 536.184