Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00038 ATGGCGTTTTCAGTACTGCTACTGTTGTTCTCTCTTGCGTTTTTGCTCTCAAACCCAACATGGGTGTGTGGGAATGGAGAGCTAAGAGCACTGATGGATTTGAAAGCCAGTTTGGATCCAGAGAGCCTTTATCTACCGTCTTGGACTGTCAATGGTGACCCATGTGGTGGATATTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTGGCAAATATTTCTCTGCAGGGTAAGGGTCTCTCAGGGAAGCTTTCACCAGCCATTGCAGGGCTCAAGCACCTGACTGGACTCTACTTACATTATAACTCTCTGTATGGAGACATACCTAGAGAGATTGCAAACTTGACTGAGCTTGTTGATTTGTATTTGAATGTAAACAATCTGTCTGGGGAAATCCCACGCGAGATAGCCACCATGGAGAACTTGCAAGTTTTGCAGCTTTGCTATAATCACTTGACTGGAAGCATTCCTACACAGCTAGGTGCTTTGAAAAAGCTGAGTGTTGTTGCATTGCAGTCAAACCAGTTAACTGGTGCTATCCCTGCTAGTCTAGGTGATTTGGGCATGCTGGCGAGGTTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGTCTTGCTGAAGCTCCTTCACTGAGAGTTTTGGATGTTCACAACAACACACTTTCTGGGAATGTACCTCCTGCTCTTAAGAGACTAGAGGATGGGTTTCTGTATAAGTACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAACGCTTCGGATCATGTCATTCCAAGCAGACCAGAGCCTTATGGAGCAGCCACTAGAGATATCCCCGAAACTGCAAATGTGAAGTTACCATGCAATGGTACTCAGTGCCTTAATTCATCAAAATCAAATAAATCCATATCAATTACTGTTGTCATATTTGTGGTAATAATTGCAATGTCTGCAATTGGTATTTTGACATTCACACTGTATCGTCGGAGAAAGCAAAAGCTTGGAGGTTCTTTTCATATCAGTGACAACCGTCAAGGTACTGAGGAGGCCATGGGTGTGTGTAGGAAAAACGGATCTTTGGTCAGCCTTGAGTACTCTACAGGATGGGACCCTTTGGCTGAGAGTAGAAATTTCAATGGGTATAGTCAAGATATGTTCCAGAGTTTGAGGTTCAATTTGGAAGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGCAAGAATAGCTTCAGTGCAACATATAGAGGAGTTTTGAGAGATGGATCCGTTGTTGCTGTGAAGAGCATAAGTAAAACTAGTTGCAAGTCGGATGAAGCTGAGTTTATGAAGGGACTGAACATGTTGACCTCATTGAGGAATGATAATGTAGTTAGGTTGAGAGGATTCTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCCAATGGAAACCTTTCACGCTTCCTTGATGTTAAGGAAGGAGATGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGGTTGCAAAAGGTATGGCATATTTACATGCATACAGAGCAAACAAACCAGTTTTGGTTCACCAAAACATCTCAGCTGACAGAGTCCTGATTGATCAGCGGTACAATCCATTGTTGGCAGATTCTGGCCTGTACAAGCTTCTTACTAATGATATTGTGTTCTCTGCACTGAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACTACTGGGCGCCTTGCTCAGACAAGTGATGTCTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCTGGGAAGCAAGAAATCACTACCAGCTCAATAAGGCTTGCTGCAGAGTGCTCCAACTTCCAAGAATTTATGGACCCAAATCTTCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCTAAAATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTCGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGAAACTGCAGTAGCTGCCTCTGA 2034 0.4351 MAFSVLLLLFSLAFLLSNPTWVCGNGELRALMDLKASLDPESLYLPSWTVNGDPCGGYFEGVACNEKGQVANISLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGDIPREIANLTELVDLYLNVNNLSGEIPREIATMENLQVLQLCYNHLTGSIPTQLGALKKLSVVALQSNQLTGAIPASLGDLGMLARLDLSSNNLFGSIPTSLAEAPSLRVLDVHNNTLSGNVPPALKRLEDGFLYKYNLGLCGVGFSSLKACNASDHVIPSRPEPYGAATRDIPETANVKLPCNGTQCLNSSKSNKSISITVVIFVVIIAMSAIGILTFTLYRRRKQKLGGSFHISDNRQGTEEAMGVCRKNGSLVSLEYSTGWDPLAESRNFNGYSQDMFQSLRFNLEEVESATQYFSELNLLGKNSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLNMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVSNGNLSRFLDVKEGDGEVLEWSTRVSIVKGVAKGMAYLHAYRANKPVLVHQNISADRVLIDQRYNPLLADSGLYKLLTNDIVFSALKGSAAKGYLAPEYATTGRLAQTSDVYAFGVLLFQILSGKQEITTSSIRLAAECSNFQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPSMEAIVQELGNCSSCL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00038 677 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Vium842g00038 677 Pfam Protein tyrosine and serine/threonine kinase 408 670 IPR001245 GO:0004672|GO:0006468
Vium842g00038 677 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Vium842g00038 677 ProSiteProfiles Protein kinase domain profile. 404 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium842g00038 677 Gene3D Ribonuclease Inhibitor 21 298 IPR032675 -
Vium842g00038 677 Gene3D Transferase(Phosphotransferase) domain 1 483 676 - -
Vium842g00038 677 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vium842g00038 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 141 671 IPR046959 -
Vium842g00038 677 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vium842g00038 677 FunFam Protein NSP-INTERACTING KINASE 2 375 482 - -
Vium842g00038 677 SUPERFAMILY Protein kinase-like (PK-like) 379 670 IPR011009 -
Vium842g00038 677 FunFam Protein NSP-INTERACTING KINASE 2 483 674 - -
Vium842g00038 677 SUPERFAMILY L domain-like 23 234 - -
Vium842g00038 677 Gene3D Phosphorylase Kinase; domain 1 373 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00038 Vium-Chr842 254241 257562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00038 8 517 Miscellaneous Gene Families AT4G22730 55.344 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vium842g00038 PK_Tyr_Ser-Thr 6.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00038 - - gmx:100775422 1209.51