Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00027 ATGATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCTTCGCCGTCCCTCGCCGAGGCGGAGAACTTCGCCGGCGGTCCCTTTCGTTCTAACGTTCGCTCCTTTCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCCCACCTGCTGACGTGGCAGATACTCTTCCGCGTTGGCGAGCTTACCGAAGGCCCCGACTCGCCTGTTGTGTGCCTTGACGTCGTGGAAGAAGACGTCGCCAGATCCAGATCCGTTTACTGTGATCAGTGCCGTGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGTAAGCGGTACCATTTTATAATCAAAGCCGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCCTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAATCACGTGACCACCACTGATGACGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACACGGCGTAGTCCACGGCAATGGATATGGGCACCTTCTACGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAACACTCTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGCCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGTGACTGGGGTTATAGATTTGGCTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCCAACCTACCCTTGTCCAACTTTTCACAGGGACAGATGCCGGTACCCCATTCCCGTGTGCAGGACATGATAAAATATTTCCAGTCTTTGTCAGAGCATGAGCTTGTAAATATAAGAGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGAGTGTATCAAATGTTGATGATACAGCCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGAGAAGGCTGACATTGAACGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTAAACTGGCGTGCTCTTAGGGGTGCGGCCTGCAAGGTGGGCTCTCCAGAACTTCTTGATTATTGCCTGGGAGAACTGGGGGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTTGAGCCTGCCACTGGTGCTTGCTATGGAGTTTTAGCGAACAATAACTCTTCAGGCTCGAAGTATCCATCCGAAGAAAACCTCCTACAGTGCTTAAGATATTTATACGACTCTTTGCTTCATCCACAGATGATGGTAAACTATGTTGAAGCAGGGACGAGGACTCTCGCGATGAGCTCAGTTCAGAAGCTTTTTGACTGCAAGCAGTTTGTGAAAGATTATAGTCCCGAGTTGTTACCATTGTCAGATTTGCACAAATTACGCATCTCATGTCAGATTGAAATCGTAGATGAATCTGAAGATCCAGAAGCCATAGCTCCAACGGAATTAATTGTGCTGCCCATGAACGCCACAGTGGCCGAGCTTAAAAGTCAAGCAGCGATTGCTTTTCAAGATGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAGCTAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTTCGAGGAAGATGCATTGGGAAAAATGGGTTAAGTAAGTTTCGGATGGAACGTGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCCAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCCGTTCCAGCACGATTTGTTTGCCTCAAATGCCAAAACAATGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTCACTAACGTTACCACTCCCACTAGTTGTTTCGGAAAAACCTTCCCAGTGCCATCTGATGTCAGTTAG 2139 0.4797 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRVGELTEGPDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHGNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYRFGSGSYCLTHEAYKSAVENLSNLPLSNFSQGQMPVPHSRVQDMIKYFQSLSEHELVNIRDLFCFIMGLIGDARKSVSNVDDTACKKRRFNASGLSISWEKADIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEPATGACYGVLANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQIEIVDESEDPEAIAPTELIVLPMNATVAELKSQAAIAFQDVYLMFRRFQVDELVGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNNESKLKSGGHCKDETVTNVTTPTSCFGKTFPVPSDVS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00027 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 16 688 - -
Vium842g00027 712 CDD PHD_MMD1_like 628 673 - -
Vium842g00027 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Vium842g00027 712 SMART PHD_3 628 674 IPR001965 -
Vium842g00027 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
Vium842g00027 712 Pfam PHD-finger 629 675 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00027 Vium-Chr842 186812 191961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00027 79 673 PHD Transcription Factor Family AT5G22260 31.024 4.34e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium842g00027 PHD 1.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00027 K26271 - gmx:100818189 1334.7