Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00025 ATGGAGTCAAGCAATTTACATGCTGATCGAAGGGCAGATAGAAAGATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCAGATGCTCGGCTTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATATCACTCCTCTGATGATTATTCCTGACACCACTCAGATAGGGCCTATTTTGACTCAGTTATCTCCCCACAAAAGTGGTTCAATTAGTCCTTCTGATATGTCTGATGAGAAGGACTGTGAAAACGGGATGACAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGGTGCAAAACTTTTGCCAGGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATTCACAATAACAAGAACACTTTTGCCAAGAGAAATCCCTCAACTAGCTAA 600 0.4217 MESSNLHADRRADRKIIIRYTECLKNHAASIGGNATDGCGEFIADGEEGTLEALRCSACNCHRNFHRKEIESSDSYITPLMIIPDTTQIGPILTQLSPHKSGSISPSDMSDEKDCENGMTKEVGNNATEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVVQNFCQEIGIKRRVLKVWIHNNKNTFAKRNPSTS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00025 199 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Vium842g00025 199 Gene3D - 117 193 - -
Vium842g00025 199 FunFam Zinc-finger homeodomain protein 2 119 193 - -
Vium842g00025 199 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Vium842g00025 199 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 190 - -
Vium842g00025 199 NCBIfam homeobox domain, ZF-HD class 132 189 IPR006455 -
Vium842g00025 199 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Vium842g00025 199 MobiDBLite consensus disorder prediction 96 115 - -
Vium842g00025 199 SUPERFAMILY Homeodomain-like 126 193 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00025 Vium-Chr842 177181 178324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00025 11 199 ZF-HD Transcription Factor Family AT2G02540 46.977 3.84e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium842g00025 ZF-HD_dimer 6.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00025 - - gmx:100793926 326.25