Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00024 ATGAAATCGAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCTGGCGAGGGAATAGCGGTGAGAGCTTTGTGCCAATTGGAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTTACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTTGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTTACCAAGAATGCGTGCCAATTGTTTGGACCCTCAATGAAGTAAACGAGCTTTTGTGTGGTACCGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTCCCCCTATTGGATTCAGCACCTTTAAAGCTAAACCCGAAATTCTTTGAGATAGAACAATACTTTGCTGCGAAAAGTCTTATATCTTCTCGATCCTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCAGAGGATGTGCATTTCACTGCTATGTCCTCTAATTATGAATCAGGCAGTGATGTTGATGGTAGTAATAATGATGAGGGCATTGTTAAGGAAGAAGTAGCATTGGCTCAAAATTCCTCTACGGATATGACTGCGTCAATTGATGCTAATGTTGGGAACAACATTGATAGTGGTTTGGAGAGTTCTTCAGTTAGTGGAGATGATACTTCTATGTTGGAGATGATTACGATAAAAGATGTCAGTAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACCGAGAAAGACAATTCTTATGATATTGTAAACATAGACATGGAGCTGGTACTTCAATGGTGTTCTTCAGCTTTTTCTGATCGCCACAGTAGAGCGAGAGTTTCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCTGAATATTTTGAGATCTCATTTGACGGTGAACCACAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTACCAAAAGTTAGACCTATCGGTATCAGTTGCTGGGAATTGTCCTGAATCAAATGGTGGAACTACCCATCTGAATGGTAATATCTTTCCTAACGAAGTATTTAATATGAGCAAGAAGTCCTTGCTGTCCAAAAGGGTTTGTGATGCCCTGTTGTCGCTAGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTGGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAGATAGAGAGAGGAAACTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATTCTTCAAAAGCTCAGAAATTATGCTTCGCAGCCATTTGAAATCAATAAGCATAGTTCACCTAGGAAGAAATTGAAAAGGACAAAGAAAAAGGATTGA 1497 0.4128 MKSKGFQWSDALEFVDTPGEGIAVRALCQLEEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPYQECVPIVWTLNEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDSAPLKLNPKFFEIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYESGSDVDGSNNDEGIVKEEVALAQNSSTDMTASIDANVGNNIDSGLESSSVSGDDTSMLEMITIKDVSSGTEVFNTYGLLGNAALLHRYGFTEKDNSYDIVNIDMELVLQWCSSAFSDRHSRARVSLWRRLGYSACGSQDSEYFEISFDGEPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCPESNGGTTHLNGNIFPNEVFNMSKKSLLSKRVCDALLSLADMRESLYGLNSVEDDIEALERCSLDRERKLYHSLVLRINERKILQKLRNYASQPFEINKHSSPRKKLKRTKKKD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00024 498 PIRSF RMS1_SET 1 478 IPR011383 GO:0016279|GO:0018026
Vium842g00024 498 CDD SET_LSMT 11 293 - -
Vium842g00024 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 450 - -
Vium842g00024 498 Pfam SET domain 21 279 IPR001214 GO:0005515
Vium842g00024 498 Gene3D set domain protein methyltransferase, domain 1 1 292 - -
Vium842g00024 498 Gene3D - 295 485 IPR036464 -
Vium842g00024 498 SUPERFAMILY SET domain 2 194 IPR046341 -
Vium842g00024 498 SUPERFAMILY SET domain 257 298 IPR046341 -
Vium842g00024 498 ProSiteProfiles SET domain profile. 10 279 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00024 Vium-Chr842 171644 174975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00024 1 496 NAC Transcription Factor Family AT3G56570 53.524 2.24e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium842g00024 SET 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00024 - K05302 vra:106769924 944.495