Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00023 ATGGCTTCCAGGCGTTTGAGGGCATTCAATCGGTGGATGAAATCGAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCTGGCGAGGGAATAGCGGTGAGAGCTTTGTGCCAATTGGAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTTACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTTGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTTACCAAGAATGCGTGCCAATTGTTTGGACCCTCAATGAAGTAAACGAGCTTTTGTGTGGTACCGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTCCCCCTATTGGATTCAGCACCTTTAAAGCTAAACCCGAAATTCTTTGAGATAGAACAATACTTTGCTGCGAAAAGTCTTATATCTTCTCGATCCTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCAGAGGATGTGCATTTCACTGCTATGTCCTCTAATTATGAATCAGGCAGTGATGTTGATGGTAGTAATAATGATGAGGGCATTGTTAAGGAAGAAGTAGCATTGGCTCAAAATTCCTCTACGGATATGACTGCGTCAATTGATGCTAATGTTGGGAACAACATTGATAGTGGTTTGGAGAGTTCTTCAGTTAGTGGAGATGATACTTCTATGTTGGAGATGATTACGATAAAAGATGTCAGTAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACCGAGAAAGACAATTCTTATGATATTGTAAACATAGACATGGAGCTGGTACTTCAATGGTGTTCTTCAGCTTTTTCTGATCGCCACAGTAGAGCGAGAGTTTCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCTGAATATTTTGAGATCTCATTTGACGGTGAACCACAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTACCAAAAGTTAGACCTATCGGTATCAGTTGCTGGGAATTGTCCTGAATCAAATGGTGGAACTACCCATCTGAATGGTAATATCTTTCCTAACGAAGTATTTAATATGAGCAAGAAGTCCTTGCTGTCCAAAAGGGTTTGTGATGCCCTGTTGTCGCTAGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTGGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAGATAGAGAGAGGAAACTGTATCATTCTTTGGTGCTGCGCATCAATGAAAGGAAGATTCTTCAAAAGCTCAGAAATTATGCTTCGCAGCCATTTGAAATCAATAAGCATAGTTCACCTAGGAAGAAATTGAAAAGGACAAAGAAAAAGGATTGA 1533 0.4162 MASRRLRAFNRWMKSKGFQWSDALEFVDTPGEGIAVRALCQLEEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPYQECVPIVWTLNEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDSAPLKLNPKFFEIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYESGSDVDGSNNDEGIVKEEVALAQNSSTDMTASIDANVGNNIDSGLESSSVSGDDTSMLEMITIKDVSSGTEVFNTYGLLGNAALLHRYGFTEKDNSYDIVNIDMELVLQWCSSAFSDRHSRARVSLWRRLGYSACGSQDSEYFEISFDGEPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCPESNGGTTHLNGNIFPNEVFNMSKKSLLSKRVCDALLSLADMRESLYGLNSVEDDIEALERCSLDRERKLYHSLVLRINERKILQKLRNYASQPFEINKHSSPRKKLKRTKKKD 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00023 510 SUPERFAMILY SET domain 3 206 IPR046341 -
Vium842g00023 510 SUPERFAMILY SET domain 269 310 IPR046341 -
Vium842g00023 510 CDD SET_LSMT 23 305 - -
Vium842g00023 510 Pfam SET domain 33 291 IPR001214 GO:0005515
Vium842g00023 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 462 - -
Vium842g00023 510 ProSiteProfiles SET domain profile. 22 291 IPR001214 GO:0005515
Vium842g00023 510 Gene3D set domain protein methyltransferase, domain 1 2 304 - -
Vium842g00023 510 Gene3D - 307 497 IPR036464 -
Vium842g00023 510 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00023 Vium-Chr842 171484 174975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00023 2 508 NAC Transcription Factor Family AT3G56570 54.104 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium842g00023 SET 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00023 - K05302 vra:106769924 969.148