Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium842g00001 ATGGCAACAACAAGAAGATATGAGTTTGGAACGAATGAGAGTAGCCACCCAGACTCTATCAGAGCCACCATAGCTGAATTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCAGTCCTTGCTTTGAATCAAATTTACAAAGAACCTGGGTCATCAGCATCTGAGCTAGTGGTAATTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTGCTGCAAGTGCACATGTTTCTGGTGGACACGTGAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATCTCCGTTCTTAAAGCTATTTACTACTGGATTGCTCAAATCCTTGGTTCTATTGTTGCTGCTCTCTTGTTGAGACTTGTCACTAACAACATGAGACCAGAGGGATTCAGTTTATCAGTTGGGGTTGGAGCGGTTCATGGTCTTATACTTGAAATTGCCCTCACATTTGGTCTGATGTACACTGTGTATGCCACTGCTATGGATCCTAAAAGGGGTACAGTTAGCACAATTGCACCCTTAGCCATTGGACTGGTGGTAGGAGCAAACATCCTGGCTGGTGGACCTTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCATTGGTGGGCTGGAGGTGGCAGAACCACTGGATCTTCTGGGTGGGCCCATTACTTGGGGCAGCCCTAGCAGCAGTCCTGTATGAATTCGTTGTTATCCCAATTGAGCCTCCTCCTCATCAACCTTTGCCTGCTGAAGAGTACTAG 765 0.4745 MATTRRYEFGTNESSHPDSIRATIAEFISTCIFVFVGEGSVLALNQIYKEPGSSASELVVIAVAHAFALFAAIAASAHVSGGHVNPAVTFGALLGGRISVLKAIYYWIAQILGSIVAALLLRLVTNNMRPEGFSLSVGVGAVHGLILEIALTFGLMYTVYATAMDPKRGTVSTIAPLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWQNHWIFWVGPLLGAALAAVLYEFVVIPIEPPPHQPLPAEEY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium842g00001 254 PANTHER AQUAPORIN-8 12 242 IPR034294 -
Vium842g00001 254 Gene3D Glycerol uptake facilitator protein. 9 242 IPR023271 -
Vium842g00001 254 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vium842g00001 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium842g00001 254 FunFam Probable aquaporin TIP1-1 5 253 - -
Vium842g00001 254 SUPERFAMILY Aquaporin-like 14 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium842g00001 Vium-Chr842 1236 2781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium842g00001 1 254 Major Intrinsic Protein MIP AT1G73190 63.806 1.85e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium842g00001 K09873 - gmx:100814469 373.629