Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8427g00001 ATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAATGCTATGGTCTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTTCTTTGGTTCAAGATCCTCCCAAAGAGAAATTGCAAGGTGTGAAGAATCCCAATGCAAAGAAGCAATCTTCCACAATCCACCACTCTTCTTCCCCCCATACTGATGAATCCCTCTTTTCCCATGTCTATGAGTATCTTCATGAAATGGAGATGCAGAAAAAGAGGAGACCAACTGTTGACTACATTGAGAAAGTTCAGAAATTGTTTACACCAACCATGAGAGCAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTTCCAGACACTCTTCATCTCTCAGTTTCGTACATTGATAGATTTTTATCGGTTAATCCGGTGAATAAATCCAGACTTCAGTTGCTGGGTGTTTCCTCCATGCTTATTGCATCCAAATACGAGGAAATTGACCCACCTTGTGTGAATGATTTTTGCAGCATCACTGATTACACATATGACAAGGCAGAGGTTGTGAAGATGGAAGCTGACATACTGCAGTCACTAAAGTTTGAAATGGGAAATCCTACTGTGAACACTTTTCTCAGAAGGTTTGCTGATAACGAAATGACTCCAAATTCACAGAGTGAATTTCTGGGCCGCTATCTTGCTGAGTTAAGTTTGTTGGATTATGATTGTTTGAAATTTTTGCCTTCGGTTGTAGCAGCATCTGCTGTATTTCTTTCTAGATTTATTATCTCGCCTGAAGTGCATCCATGGACTCCTTCTTTGAGTGAATGTTCTGGTTACAAATCAGCCGAATTGAAAGAATGTGTCTTAATTTTGCATGACCTGTACTTGTTACGAAAGGCAGCATCTTTCAAAGCTGTCCGGGATAAGTACAAGCAGCAAAAGTTCAAATGCGTTGGAAACCTGCCTTCCCCTCCTTATGTACCCAATTGTTACTTTGAAGACCAGTGA 990 0.4141 METRAASKRKANAMVLVQKQHPKRHRVSLVQDPPKEKLQGVKNPNAKKQSSTIHHSSSPHTDESLFSHVYEYLHEMEMQKKRRPTVDYIEKVQKLFTPTMRAILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVNKSRLQLLGVSSMLIASKYEEIDPPCVNDFCSITDYTYDKAEVVKMEADILQSLKFEMGNPTVNTFLRRFADNEMTPNSQSEFLGRYLAELSLLDYDCLKFLPSVVAASAVFLSRFIISPEVHPWTPSLSECSGYKSAELKECVLILHDLYLLRKAASFKAVRDKYKQQKFKCVGNLPSPPYVPNCYFEDQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8427g00001 329 Gene3D - 82 197 - -
Vium8427g00001 329 SMART cyclin_7 203 287 IPR013763 -
Vium8427g00001 329 SMART cyclin_7 106 190 IPR013763 -
Vium8427g00001 329 SMART Cyclin_C_2 199 318 IPR004367 -
Vium8427g00001 329 PANTHER CYCLINS 62 310 IPR039361 -
Vium8427g00001 329 CDD CYCLIN_AtCycA-like_rpt2 199 309 - -
Vium8427g00001 329 SUPERFAMILY Cyclin-like 72 196 IPR036915 -
Vium8427g00001 329 PIRSF Cyclin_A_B_D_E 1 322 IPR046965 GO:0016538|GO:0044772
Vium8427g00001 329 MobiDBLite consensus disorder prediction 43 62 - -
Vium8427g00001 329 FunFam Cyclin A1 186 314 - -
Vium8427g00001 329 Pfam Cyclin, C-terminal domain 199 317 IPR004367 -
Vium8427g00001 329 Gene3D - 69 313 - -
Vium8427g00001 329 Pfam Cyclin, N-terminal domain 69 196 IPR006671 -
Vium8427g00001 329 MobiDBLite consensus disorder prediction 1 62 - -
Vium8427g00001 329 SUPERFAMILY Cyclin-like 199 320 IPR036915 -
Vium8427g00001 329 ProSitePatterns Cyclins signature. 101 132 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8427g00001 Vium-Chr8427 1122 2429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8427g00001 3 328 Core Cell Cycle Gene Families AT5G43080 55.233 4.14e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8427g00001 K06627 - gmx:547779 497.664