Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8424g00003 ATGCACTATTTAAAAGACAAATCCACAGCAGAATTAATCAGTAGCGAAATGGATTCGACAGATAGCAGTGCGAAAACAAAATCTAAAGAAATTGAACTGTGTTACGATGACTATCCCAAGAAGAGAAAGCGTCCTTCCCAAGTAGCGGTGGTTATTCCCACCATGGAAGAATCCAAGGCCGCCGCGTCCTCCTCCTCCTCCTCCGCAACGCACGGTTCCATATCCGTGATCGGGCGGCGACGCGCAATGGAGGACGCCGTCATGGTGTTTCCCGGCTTGGTGGCGGCGGGGCAGTGGTGTGGCGGTTATGATTTCTTCGCGGTTTACGACGGACACGGCGGGACGTTGGTGGCGAACGCTTGCCGCGACAGGCTACACCTGCTGTTGGCGGATGAAGTGAGGGAGAACGCGAAGAAGGGATTGGATTGGTGCGAGGTTATGTATTCGTGTTTCATGAAGATGGACAAGGAGATCGGAGTTGGTGGTAAGGCGAACGATGACGGTGGCGGAAACACCACAGGTTCAACGGCGGCGGTTGTTGTCGTTGGGAAGAAGGAGATTGTGGTGGCGAATTGCGGTGACTCGAGGTCGGTGTTGTGCCGCGGCGGTGTAGCCATAGCACTTTCGCGTGATCATAAGCCTGATCGTTCAGATGAAAGAGAGAGAATAGAAGCTGCCGGTGGAAGAGTGATTAACTGGAACGGAAGTCGTGTTTTGGGAGTTCTTGCAACTTCCAGATCCATAGGGGATCATTCGATGAAACCTTTTGTGATATCTGAGCCAGAGACGATGGTGTACGAGCGAACAGAGCGTGATGAGTTTGTGGTGGTAGCAAGCGATGGGTTATGGGATGTGGTGTCAAACAAGTTTGTTTGTGAGGTTGTACGAAGCTGCCTCCATGGCCAAATCAAGAGGAATTTAAAAGAGGAGACTGTTGTAAGCAATGCAACAGAAGCTGCATCTTTGTTGGCAGAGTTGGCCATGGCTCGTGGAAGCAAAGACAATATCAGTGTCATAGTCATCCAACTCAACAACACCACTTCATCCTGA 1050 0.5095 MHYLKDKSTAELISSEMDSTDSSAKTKSKEIELCYDDYPKKRKRPSQVAVVIPTMEESKAAASSSSSSATHGSISVIGRRRAMEDAVMVFPGLVAAGQWCGGYDFFAVYDGHGGTLVANACRDRLHLLLADEVRENAKKGLDWCEVMYSCFMKMDKEIGVGGKANDDGGGNTTGSTAAVVVVGKKEIVVANCGDSRSVLCRGGVAIALSRDHKPDRSDERERIEAAGGRVINWNGSRVLGVLATSRSIGDHSMKPFVISEPETMVYERTERDEFVVVASDGLWDVVSNKFVCEVVRSCLHGQIKRNLKEETVVSNATEAASLLAELAMARGSKDNISVIVIQLNNTTSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8424g00003 349 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
Vium8424g00003 349 CDD PP2Cc 71 343 IPR001932 -
Vium8424g00003 349 FunFam Protein phosphatase 2C 51 63 349 - -
Vium8424g00003 349 Gene3D - 64 348 IPR036457 -
Vium8424g00003 349 MobiDBLite consensus disorder prediction 1 27 - -
Vium8424g00003 349 SMART PP2C_4 57 341 IPR001932 -
Vium8424g00003 349 Pfam Protein phosphatase 2C 75 336 IPR001932 -
Vium8424g00003 349 ProSiteProfiles PPM-type phosphatase domain profile. 70 343 IPR001932 -
Vium8424g00003 349 PANTHER PROTEIN PHOSPHATASE 57 342 IPR015655 GO:0004722|GO:0006470
Vium8424g00003 349 SUPERFAMILY PP2C-like 62 345 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8424g00003 Vium-Chr8424 12628 18032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8424g00003 14 343 PP2C-type Phosphatase Gene Family AT2G29380 43.804 5.83e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8424g00003 K14497 - gmx:100813248 442.965