Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8420g00003 ATGGATACAATTAAGTCATTCAAGGGCTACGGCAAAGTTGACGAGCTGGAACAGCAAGCCTATCAGAAGAAGACACGTAAGCGCATCATAATCATCACAGTGTCTTCCATCGTTCTGATTGCGGTCATCATCGCTGCGGTTGCAGGGGTCGTCATACACAACCGCAACAACAAATCGTCGCCCTCATCTGACTCGGCCCAGCAAACTCAGTTGTCTCCGGCCGCGTCACTCAAAGCGGTGTGCAAGGCTACTCGCTACCCTGACTCCTGCTTCTCCTCCATATCCTCGTTGCCGGAATCCAACACAACCGACCCGGAGCTCCTCTTCAAGCTCTCGCTACGCGTCGCCATTGACGAGCTCTACAAGCTCTCCAGCTTCCCTTCCAAGCTCCGTGCCAATGCGGAGCACGACGCGCGTCTGCAGAAGGCGATCGACGTCTGCAGTTCCGTCATCGGTGACGCGTTGGACCGCCTCAAAGACTCGATCTCCGCGCTCGGAACCGTCACCGGAAGGATTGTTTCTTCGGCGAGCGTCAACGACGTGGAGACGTGGCTCAGCGCGACGCTCACGGACCAGGACACGTGCCTCGACGCGCTTGGCGAGCTGAACTCCACCGCCGCTCGCGGCTCTCTCCAGGAGATCGAGACCGCCATGAGGAACTCCACGGAGTTCGCGAGCAACAGCTTGGCTATCGTGACGAAGATCCTTCGGTTGCTGTCGCAGTTCGAGAAACCGGATCACCACCGGCGGCTGCTAGAGTTTCCGCAGTGGCTGGGTGCGGCGGAGCGAAGGCTGCTGGAGGAGAAGAACAACGAATCGACGCCGGATGCTGTGGTGGCGAAGGACGGTAGTGAACAGTTCAAGACGATCGGCGAGGCGCTGAAGTTGGTGACGAAGAAGAGCGAGAAGAGATTCTCGGTGTACGTGAAGGAAGGGAGCTACGTGGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTACGGTGATGGGAAGGACAAAACCGTCATCGTCGGTAACCGGAACTTCATAGACGGAACGCCGACTTTCGAAACTGCAACTTTCGCTGTTAAAGGCAAGGGATTCATAGCCAAAGACATAGGGTTTGTGAACAATGCAGGTGCTTCAAAGCACCAGGCTGTGGCATTGAGATCTGGGTCAGATCGCTCTGTGTTCTTCAGATGCTCATTTGATGGCTTCCAAGATACCCTCTATGCTCATTCCAACCGCCAATTCTACCGTGACTGTGACATTACAGGCACCATAGACTTCATATTTGGCAATGCAGCAGTTGTGTTCCAAAATTGCAAAATAATGCCTAGACAGCCTTTACCAAACCAGTTCAACACCATCACAGCTCAGGGAAAGAAAGATCCTAACCAGAACACTGGAATTATAGTTCAGAAATCAACGATCACTCCTCTGGGTAACAATCTCACTGCTCCCACATACCTTGGCAGGCCATGGAAAGATTTCTCCACCACTGTCATCATGCAATCTGATATTGGGTCATTCTTGAATCCGGTGGGGTGGATGAGTTGGGTCCCTAATGTGGAACCTGTAAGTACCATCTTCTACGCAGAATATCAGAATAATGGGCCAGGAGCTGACGTGTCCAAGAGGGTCAAATGGGCCGGTTATAAGCCCACTCTCACGGACACCGATGCAGATAGGTTCACTGTGGAGTCCTTTATCCAAGGCCCTGATTGGTTGCCAAATGCAGCTGTGCAGTTTGATTCCACCTTGTGA 1755 0.5288 MDTIKSFKGYGKVDELEQQAYQKKTRKRIIIITVSSIVLIAVIIAAVAGVVIHNRNNKSSPSSDSAQQTQLSPAASLKAVCKATRYPDSCFSSISSLPESNTTDPELLFKLSLRVAIDELYKLSSFPSKLRANAEHDARLQKAIDVCSSVIGDALDRLKDSISALGTVTGRIVSSASVNDVETWLSATLTDQDTCLDALGELNSTAARGSLQEIETAMRNSTEFASNSLAIVTKILRLLSQFEKPDHHRRLLEFPQWLGAAERRLLEEKNNESTPDAVVAKDGSEQFKTIGEALKLVTKKSEKRFSVYVKEGSYVENIDLDKNTWNVMIYGDGKDKTVIVGNRNFIDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIVQKSTITPLGNNLTAPTYLGRPWKDFSTTVIMQSDIGSFLNPVGWMSWVPNVEPVSTIFYAEYQNNGPGADVSKRVKWAGYKPTLTDTDADRFTVESFIQGPDWLPNAAVQFDSTL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8420g00003 584 PANTHER PECTINESTERASE 38 574 - -
Vium8420g00003 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 235 IPR035513 -
Vium8420g00003 584 Pfam Plant invertase/pectin methylesterase inhibitor 77 231 IPR006501 GO:0004857
Vium8420g00003 584 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Vium8420g00003 584 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Vium8420g00003 584 CDD PMEI-like_3 79 237 - -
Vium8420g00003 584 SMART PMEI_2 72 231 IPR006501 GO:0004857
Vium8420g00003 584 NCBIfam pectinesterase inhibitor domain 63 235 IPR006501 GO:0004857
Vium8420g00003 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 236 IPR035513 -
Vium8420g00003 584 Pfam Pectinesterase 276 569 IPR000070 GO:0030599|GO:0042545
Vium8420g00003 584 FunFam Pectinesterase 270 584 - -
Vium8420g00003 584 FunFam Pectinesterase 73 236 - -
Vium8420g00003 584 Gene3D - 270 584 IPR012334 -
Vium8420g00003 584 SUPERFAMILY Pectin lyase-like 274 581 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8420g00003 Vium-Chr8420 44487 48021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8420g00003 1 578 Carbohydrate Esterase AT1G53840 58.446 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8420g00003 - - pvu:PHAVU_010G123100g 1020.38