Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8420g00002 ATGAGTAACCCAAAACTTCCCTACACCGGAATCTCAGATTCCGGTAACCACACTTCTCTCTCTAAAAAATCTTTCTACAAGAAGAAGCTTTTCCTGACTCTTTTCGCCACCCTCCTGGTGGCAGCCTCCGTAGCGGCCATTGTCGCTGGAGTGAAAAACAAAAATCAAAAGTCCGACAGTAGCAGCAGCAGCTCTCTGTCCCTCTCCCACCAGTCCCACGCGATTCTTAAGAGCGCGTGTAGTTCTACATTCTACCCAGAACTCTGCTTCTCTGCTGTGGCTTCAGAACCCAACGTAACTCACAAAGTAACCTCTCACCGTGACGTCATTAAACTCTCCCTCGACATCACCACGCGCGCCGTGGAGCACAACTACTTCACCGTGAAGAAGCTCACCACCAAGCACGGCCTAACGAAGCGCGAGAAAACCGCGCTCCACGATTGTCTCGAAACCATTGACGAGACCCTCGACGAGCTGAAAGAGGCCAAGCGCGATCTCGAGCTCTACCCCAACAAGAAAACACTGTACCAGCACGCCGACGATCTGAAAACCTTAATCAGCGCCGCCATCACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGACGCCGATAAGCGCATCCGGAAGGCTCTGGAAAAAGGCCAGGTGCACGTGGAACACATGTGCAGCAACGCACTGGCCATGACCAAGAACATGACCGACACCGACATTGCCAACTTCGAACAGAGCACGAAGCTCCGAGACAACAACGTTGGCCAAAATAGAAAGCTCTTGGCCGAGGAGAGCAATGCTGGTGTTGTCTGGCCGGAGTGGATTTCTGCTACCGACAGGAGGCTGCTTCAGGCAACGACAGTGAAGGCCGATGTGGTGGTGGCTGCGGACGGCAGTGGGAACTTTAAGACGGTGTCGGAGGCAGTGGACGCGGCTCCGTTGAAGAGTAGTAAAAGATTTGTTATAAGGATAAAGGCTGGAGTTTACAAAGAAAATGTAGAAGTTCCAAAGAAGAAGACCAACATCATGTTCTTGGGTGATGGAAGAACCACCACCATCATCACCGCCAGCAGAAACGTCGTCGACGGTAGCACCACCTTCCACTCTGCCACCGTCGCTGTGGTGGGTGAAAATTTCCTAGCTAGGGACATAACATTCCAAAACACAGCAGGACCCTCAAAGCACCAAGCAGTGGCTCTAAGAGTAGGAGGGGACCTATCAGCATTTTACAACTGTGACATCTTAGCATACCAAGACACTCTCTATGTCCACAACAACCGTCAATTCTTTGTGAAGTGTCTCATTGCAGAGACAGTGGATTTCATCTTTGGTAACTCTGCAGTGGTGTTTCAAGACTGTGACATCCATGCCAGGCGTCCGGACTCGGGTCAGAAGAACATGGTGACGGCCCAAGGAAGGGTAGACCCTAACCAAAACACTGGCATTGTGATCCAGAAGTGTAGGATTGGTGCAACTTCAGATTTGGAGTCTGTGAAGAAGAGTTTCAAGACCTATCTTGGGAGACCATGGAAGGAGTATTCAAGAACTGTGATCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAGTGGCAACTTTGCATTGAGCACTTTGGTCTATAGGGAATATCAGAACACTGGGCCTGGTGCTGGAACCTCCAATAGGGTCTCTTGGAAAGGGTTCAAAGTTATAACTGATGCTGCTGAAGCCCGGGCTTTTACCCCTGGAAGCTTCATTGGAGGCTCTAGCTGGTTGGACTCTACGGGCTTTCCTTTCTCTCTTGGCTTGTAA 1806 0.5089 MSNPKLPYTGISDSGNHTSLSKKSFYKKKLFLTLFATLLVAASVAAIVAGVKNKNQKSDSSSSSSLSLSHQSHAILKSACSSTFYPELCFSAVASEPNVTHKVTSHRDVIKLSLDITTRAVEHNYFTVKKLTTKHGLTKREKTALHDCLETIDETLDELKEAKRDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRIRKALEKGQVHVEHMCSNALAMTKNMTDTDIANFEQSTKLRDNNVGQNRKLLAEESNAGVVWPEWISATDRRLLQATTVKADVVVAADGSGNFKTVSEAVDAAPLKSSKRFVIRIKAGVYKENVEVPKKKTNIMFLGDGRTTTIITASRNVVDGSTTFHSATVAVVGENFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVKCLIAETVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLESVKKSFKTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWSGNFALSTLVYREYQNTGPGAGTSNRVSWKGFKVITDAAEARAFTPGSFIGGSSWLDSTGFPFSLGL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8420g00002 601 SUPERFAMILY Pectin lyase-like 285 600 IPR011050 -
Vium8420g00002 601 NCBIfam pectinesterase inhibitor domain 64 234 IPR006501 GO:0004857
Vium8420g00002 601 Pfam Pectinesterase 290 586 IPR000070 GO:0030599|GO:0042545
Vium8420g00002 601 CDD PMEI-like_3 78 235 - -
Vium8420g00002 601 PANTHER PECTINESTERASE 43 591 - -
Vium8420g00002 601 SMART PMEI_2 71 230 IPR006501 GO:0004857
Vium8420g00002 601 FunFam Pectinesterase 72 235 - -
Vium8420g00002 601 Gene3D - 284 601 IPR012334 -
Vium8420g00002 601 Coils Coil 145 169 - -
Vium8420g00002 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
Vium8420g00002 601 Pfam Plant invertase/pectin methylesterase inhibitor 76 230 IPR006501 GO:0004857
Vium8420g00002 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 235 IPR035513 -
Vium8420g00002 601 FunFam Pectinesterase 284 601 - -
Vium8420g00002 601 ProSitePatterns Pectinesterase signature 1. 315 334 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8420g00002 Vium-Chr8420 30458 35380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8420g00002 20 601 Carbohydrate Esterase AT3G14310 71.405 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8420g00002 K01051 - pvu:PHAVU_010G123100g 1043.11