Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8418g00001 ATGGAGTTTGCTTCTTTTTCTTCATCATCATCATCTTTATCCTTCTTAAAATCAGAACCCCAATTCATATACGATGTGTTCATCAACTTTGGGGGAGAAGATATCGGTAGAAAGTTCGTTTCTCATCTCCATTCTGCCCTTTTACTAGCTCAAGTCAAAACTTTTATTAGCAAGGAGAATCTGCAAGAGGGAATTAAGCTGGAAGAACACATGCGAGCAATAGCAAGCTCTAAGATTGCAATAATTGTTTTCTCCAAGACATACACTGAATCTACCTGCTCGCGTCTTGAGCTTGAAAAAATCATTGAATGCCGCCAAACTTTTGGACAAATAGTTCTGCCAGTAATTTACGATATTGCACGATTGGATGAACATCTTCAGAAGGTTGTAAGGGTGTTGGAAAAAGCTGCACCAGGAAGCTATTCAGGAGAACAACTGGACCATGCAATGTCCAGGTGGAGCAGAGCACTAACCAAAGCTGCAGGTGTCACTGGTTGGGATTTCAGAGATTTCAGGCACGATGCTGAATTTGTGGAGGAAATTGTTAGACGCATTCAGACATTGCTGGACTATACAGACATGTCTATTACCCAATTTCCTGTTGGATTAGAGTCCCACGTGGAAAAGGTGATTGCATTGGTTGAAGAACAATCCACTGAAGTCTGTATGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCTTAGCCAAAGCCATTTATAATCGAATTTATCATTCATTCATTGGTAAGAGTTTTATTGAAAATATTGGACAATTTTGGAATCTGGTAAACAAAAGGCATGTTCATTTGCAAGAAAATCTCCTATATGATGTCTTAAAATCCAAGTTTGAGGTGGAAAGCGATAGGGTGGGAAGAACCATGATCGAGACTAAACTTTCACGAAAAAAGTTGCTTATTGTGCTTGATGGTGTGAATGAGTTTGGCCAATTAGAAAACTTATGCGGGAATCGAGAATGGTTCGGTCAAGGAACTGTGATAATCCTCACAACTAGAGATGTTACCGTGCTGAACCGACTAAAAGTTAATCATGTGTATAAAATTGATGTTATGAACGAAAATGATTCCATTGAGCTTTTAAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGAATTGAATGAACATGCAAGAAGCATAGTTGCTTATTGTGGAGGACTACCACTTGCTCTTCAATTCCTTGGTTCCTATTTATGTGATAGGACAAAGGAAGAGTGGGAAAGTGTATCATCAAAACTAAAAGTAAATCCCTTTAATCAAATACTTGAGAAATTGGAAATTAGTTTTGATGGTTTACATGACATGGAAAAGGATATATTTCTTGATATATGTTGCTTCTTTATTGGTAAAGAGAGAAGCTATGTTACAAAAATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAACAGTTCTCATAGAACGTGGCCTCATAAAAGTTGAAAGGTACAACAAACTTCAAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTATCCGTCGAAGATGCCCAAAGGAACGAGGGAAAAGGAGTCGATTATGGTTTCAGGATGATATAAAAGATGTACTGAAAAAGAATACTGTAAGAACATTCTTTATATGTCTTTGA 1641 0.3778 MEFASFSSSSSSLSFLKSEPQFIYDVFINFGGEDIGRKFVSHLHSALLLAQVKTFISKENLQEGIKLEEHMRAIASSKIAIIVFSKTYTESTCSRLELEKIIECRQTFGQIVLPVIYDIARLDEHLQKVVRVLEKAAPGSYSGEQLDHAMSRWSRALTKAAGVTGWDFRDFRHDAEFVEEIVRRIQTLLDYTDMSITQFPVGLESHVEKVIALVEEQSTEVCMIGIWGMGGSGKTTLAKAIYNRIYHSFIGKSFIENIGQFWNLVNKRHVHLQENLLYDVLKSKFEVESDRVGRTMIETKLSRKKLLIVLDGVNEFGQLENLCGNREWFGQGTVIILTTRDVTVLNRLKVNHVYKIDVMNENDSIELLSWHAFREAKPRKELNEHARSIVAYCGGLPLALQFLGSYLCDRTKEEWESVSSKLKVNPFNQILEKLEISFDGLHDMEKDIFLDICCFFIGKERSYVTKILNGCGLYADIGITVLIERGLIKVERYNKLQMHPLLRDMGREIIRRRCPKERGKRSRLWFQDDIKDVLKKNTVRTFFICL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8418g00001 546 Pfam TIR domain 24 190 IPR000157 GO:0007165
Vium8418g00001 546 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 130 IPR035897 -
Vium8418g00001 546 Pfam NB-ARC domain 204 428 IPR002182 GO:0043531
Vium8418g00001 546 Gene3D - 358 442 IPR042197 -
Vium8418g00001 546 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 534 IPR044974 GO:0006952
Vium8418g00001 546 Gene3D - 189 354 IPR027417 -
Vium8418g00001 546 SUPERFAMILY "Winged helix" DNA-binding domain 429 535 IPR036390 -
Vium8418g00001 546 PRINTS Disease resistance protein signature 223 238 - -
Vium8418g00001 546 PRINTS Disease resistance protein signature 393 407 - -
Vium8418g00001 546 PRINTS Disease resistance protein signature 300 314 - -
Vium8418g00001 546 Gene3D - 17 188 IPR035897 -
Vium8418g00001 546 ProSiteProfiles TIR domain profile. 22 189 IPR000157 GO:0007165
Vium8418g00001 546 SMART till_3 23 163 IPR000157 GO:0007165
Vium8418g00001 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8418g00001 Vium-Chr8418 25 1938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8418g00001 24 538 WRKY Transcription Factor Family AT4G12020 28.846 4.31e-56 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8418g00001 - - vun:114165119 771.541