Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8417g00003 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTATCCAAGTTCAAAGATGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAATTGTAGAGATTATCATAGGCGACACAAGGTGTGTGAGCTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACCCGACCTGGTAGTTTTTTATCGAATTACCAAGATTTTTCAGGTACTCAGTTGCTACCATTCTCAAATCCACACGTGTATCCTTCCACTGCCATGATGAGCACCCCTTGGAGTGGAGGGCTTGTGACTTCCTCTGCAGATGCGAGGTTGCACAACCAGCACCACCATCAAGAGCTTTTTCTAGGATCTTCTCACAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATAGCAACCAAAGCCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACGACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAATCAAATGGTGCAGGCACCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGTCTGCAGGATAACACCAACTTAGAGTCTGTGGAGCGAGTTTTGGTTCCCAATGGCAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1155 0.4805 MDWNLKAPSWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALSKFKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQDFSGTQLLPFSNPHVYPSTAMMSTPWSGGLVTSSADARLHNQHHHQELFLGSSHKEGKQVAFLHGNHSNQSLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQAPSMSLMQPLGLSLQDNTNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8417g00003 384 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Vium8417g00003 384 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
Vium8417g00003 384 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Vium8417g00003 384 MobiDBLite consensus disorder prediction 158 183 - -
Vium8417g00003 384 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Vium8417g00003 384 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 377 IPR044817 GO:0003677
Vium8417g00003 384 Pfam SBP domain 97 170 IPR004333 GO:0003677
Vium8417g00003 384 MobiDBLite consensus disorder prediction 159 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8417g00003 Vium-Chr8417 34257 37770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8417g00003 1 384 SBP-box Gene Family AT5G50670 41.000 3.02e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8417g00003 SBP 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8417g00003 - - gmx:100787407 590.882