Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8417g00002 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTATCCAAGTTCAAAGATGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAATTGTAGAGATTATCATAGGCGACACAAGGTGTGTGAGCTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACCCGACCTGGTAGTTTTTTATCGAATTACCAAGGTACTCAGTTGCTACCATTCTCAAATCCACACGTGTATCCTTCCACTGCCATGATGAGCACCCCTTGGAGTGGAGGGCTTGTGACTTCCTCTGCAGATGCGAGGTTGCACAACCAGCACCACCATCAAGAGCTTTTTCTAGGATCTTCTCACAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATAGCAACCAAAGCCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACGACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAATCAAATGGTGCAGGCACCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGTCTGCAGGATAACACCAACTTAGAGTCTGTGGAGCGAGTTTTGGTTCCCAATGGCAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1146 0.4825 MDWNLKAPSWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALSKFKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQGTQLLPFSNPHVYPSTAMMSTPWSGGLVTSSADARLHNQHHHQELFLGSSHKEGKQVAFLHGNHSNQSLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQAPSMSLMQPLGLSLQDNTNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8417g00002 381 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Vium8417g00002 381 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Vium8417g00002 381 MobiDBLite consensus disorder prediction 158 184 - -
Vium8417g00002 381 Pfam SBP domain 97 170 IPR004333 GO:0003677
Vium8417g00002 381 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Vium8417g00002 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 374 IPR044817 GO:0003677
Vium8417g00002 381 MobiDBLite consensus disorder prediction 159 173 - -
Vium8417g00002 381 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8417g00002 Vium-Chr8417 34257 37770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8417g00002 1 381 SBP-box Gene Family AT5G50670 41.310 1.84e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8417g00002 SBP 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8417g00002 - - gmx:100787407 596.275