Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8411g00010 ATGTCAAGGTTGGTTCAGGAGAAGAAGATAGGTGCAGGACGTGTGGTAGCAGTGGCAATTGAAAATAACAAAACAAGCCAATATGCAGCAAAATGGGCTGTTGATAATCTTCTTCCCAAAGAACAAGCGCTCTTACTGCTCCATGTTAGACAGAGAGCATCTTCCATTCCTACACCAACGGGAAATCTTATACCTCTTGATGGCAACGATGATGTGGCTAGAGCATACATGCAACAGATGGACAACGAATCTAAAGAACTTTTCGCTTCGTTTCGGGTCTTCTGCAATAGAAAAAGTATACAATGCAAAGAGATCTTACTGGATGACGTAGATATAACCAAGGGATTAATAGAAGGTATTTCTAAATACGCCATCGAGCTTCTGGTACTTGGGGCACCTTCAAGGAGTGGTCTTGTAAGAAGATTTAGGACATCGGATGTTCCAAGTCTTGTGTCGAAAGGGGCACCACCATTCTGTACTGTGTACATAATTTCCAAAGGAAAAATCGCATCGGTGAAAACTGCTACTGCTAAACCTCCACCACGTAACAATACACTGCAGCCGCAGCAATCTCTTCAAACTCCTGGTAGAATGGACCCACACCTAACACGCAATCCTGCCCTAGCACGACCATCAATGGAGAAGGTACCCTACATTGTCCGCCAGCAACCAGCAGATGAAGACGATATAATATCACCCTTTACAAGACCTGGTAGAGGAGGAAGTTACAGATCATACGAGTCCTCCATCGCTGACTCTGATATTTCATTCGTGAGCAGTGGAAGGCCTAGTGTTGATAGGATGTTCCCTTCAATGTATGATGATATGGACTCTTGTATAAATCCCCGGCTTTCAACAGGCTCAGATTTTGATATGAGAAGCTATGGCTCTTCATTCTCAGGAGCCAAATCAATTGATCATGGTGACTACTCATTCAGTTCACAAGACAGTGGGACATCAATGTCATCGTCCATATTTTCAGCCTCAGATGAAGTGGAAGCTGAAATGAGGAGACTGAAGCTAGAACTGAAGCAGATGGAAATGTACAGTACTGCATGCAAGGAAGCTATGACAGCTAAGCAAAAGGCACTAGAACTTCAGCGTTGGAAAGTGGAAGAACAAAGGAAAATGGAAGAGGCACGATTAACTGAAGAAACAGCATTGTCAATGGATGAGAAGGAGAAAGCAAAATGCGTAACTGCCATGGAAGCAGCAGAAACATCTCGAAAAATTGCAGAGTTGGAAGCACGAAAGAGAATGACTGTAGAATCTGGGCATAAGAAGACTACAGATATGTTTTCACACTGTCCCGCCAGGTACAGAAGGTACACTATAGAGGAAATAGAAGAAGCAACGAATTTATTTTCGAACTCTCTCAAGGTCGGTGAAGGTGGTTATGGGCCAGTCTATAGATGCGAACTAGATCACACACCAGTTGCAGTGAAGATATTGAAACCAGATGCAGCTCAGGGACAAGCACAGTTTCAGCAGGAGATTGAAGTGCTAAGTAGCATAAGGCATCCAAATATGGTTCTTCTCCTTGGAGCGTGCCCAGAGTTTGGCTGCTTGGTGTATGAGTATATGGCTAATGGAAGTTTGGATGATTGCCTATTTCGGAGGGGCAACAAAAGAGCTCTTCCCTGGCAGCTGAGATTCCGAATTGCTGCAGAGATTGCAACTGGGCTCCTCTTCCTACACCAGACAAAGCCAGAACCACTTGTGCACCGTGACTTGAAACCTGGGAATATTTTGCTTGACCGTAACTTCGTGAGCAAGATCAGTGATGTGGGATTGGCCAGGCTTGTTCCGGCTTCAGTTGAAGATAGTGTCACACAGTATCGAATGACATCAACTGCGGGAACTTTCTGTTACATTGACCCTGAGTATCAGCAAACGGGCATGCTGGGAACCAAATCTGACATTTATTCATTGGGGATCATGCTTCTACAGATAATAACAGCAAAGCCACCAATGGGTTTGACTCACCATGTCGAAAGAGCTATTGAGAAGGGGACTTTTGCGGAGATGCTTGACCCAGCCGTTGAGGACTGGCCAATTGAACATGCCTTGCGTTTTGCCAAGCTTGCCTTGGCGTGTGCAGAAATGAAAAGAAAAGATAGACCTGATCTTGCAAAGGTTGTATTGCCCGAGCTCAATAAACTCAGAGACTTTGCTGAAGATAACATGCCCATGATGATGATGTTCGGTGCTCCCACAGGATTCGGTCAAAGGAGCAACTACAACTACTCAAACTACCCCATTTCCTCAGCTCAAAACTCCATGAGTGACGGCTCAACGTCAGGAATGTCCGGATACGAAACCCACTCAAGCTCACATGATTAA 2343 0.4481 MSRLVQEKKIGAGRVVAVAIENNKTSQYAAKWAVDNLLPKEQALLLLHVRQRASSIPTPTGNLIPLDGNDDVARAYMQQMDNESKELFASFRVFCNRKSIQCKEILLDDVDITKGLIEGISKYAIELLVLGAPSRSGLVRRFRTSDVPSLVSKGAPPFCTVYIISKGKIASVKTATAKPPPRNNTLQPQQSLQTPGRMDPHLTRNPALARPSMEKVPYIVRQQPADEDDIISPFTRPGRGGSYRSYESSIADSDISFVSSGRPSVDRMFPSMYDDMDSCINPRLSTGSDFDMRSYGSSFSGAKSIDHGDYSFSSQDSGTSMSSSIFSASDEVEAEMRRLKLELKQMEMYSTACKEAMTAKQKALELQRWKVEEQRKMEEARLTEETALSMDEKEKAKCVTAMEAAETSRKIAELEARKRMTVESGHKKTTDMFSHCPARYRRYTIEEIEEATNLFSNSLKVGEGGYGPVYRCELDHTPVAVKILKPDAAQGQAQFQQEIEVLSSIRHPNMVLLLGACPEFGCLVYEYMANGSLDDCLFRRGNKRALPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPASVEDSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQIITAKPPMGLTHHVERAIEKGTFAEMLDPAVEDWPIEHALRFAKLALACAEMKRKDRPDLAKVVLPELNKLRDFAEDNMPMMMMFGAPTGFGQRSNYNYSNYPISSAQNSMSDGSTSGMSGYETHSSSHD 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8411g00010 780 PANTHER OS02G0152300 PROTEIN 15 737 - -
Vium8411g00010 780 Gene3D Phosphorylase Kinase; domain 1 425 527 - -
Vium8411g00010 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Vium8411g00010 780 Gene3D HUPs 14 164 IPR014729 -
Vium8411g00010 780 Pfam Universal stress protein family 14 145 IPR006016 -
Vium8411g00010 780 CDD STK_N 15 167 - -
Vium8411g00010 780 MobiDBLite consensus disorder prediction 222 246 - -
Vium8411g00010 780 MobiDBLite consensus disorder prediction 174 208 - -
Vium8411g00010 780 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 427 527 - -
Vium8411g00010 780 FunFam U-box domain-containing protein 51 528 728 - -
Vium8411g00010 780 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 151 - -
Vium8411g00010 780 Coils Coil 329 349 - -
Vium8411g00010 780 MobiDBLite consensus disorder prediction 758 780 - -
Vium8411g00010 780 SUPERFAMILY Protein kinase-like (PK-like) 434 714 IPR011009 -
Vium8411g00010 780 Pfam Protein kinase domain 458 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8411g00010 780 Gene3D Transferase(Phosphotransferase) domain 1 528 733 - -
Vium8411g00010 780 MobiDBLite consensus disorder prediction 177 198 - -
Vium8411g00010 780 ProSiteProfiles Protein kinase domain profile. 455 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8411g00010 780 SMART serkin_6 455 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8411g00010 Vium-Chr8411 80599 84535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8411g00010 16 729 Receptor kinase-like Gene Family AT5G35380 56.944 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium8411g00010 Pkinase 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8411g00010 - - gmx:100803837 1290.02