Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8411g00006 ATGGAAGACTATGATACACGGAGGGATAATGGTGGAAGTGGAGTGGCGGTGCCACCCTGCACTTGCTCGGGAGAAGAATTTCGCGCGTCTGGCGGTGGAAAAGGATCATTGCGAGTTGTCGCGGCTGCTAGAAACGGTTCTTCTGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTCAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGAGTGTTGCGGAAGGACGGTCCTTCGCTTGGTCAGGAGTTTGACTTTCTTCCTTCTGGACCCAGACACACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAAGAGGAAGGGTTCCAAGAGTGCAATTCGAAGTCTCACCGATTGTAATAGGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTGGAGACCTTCCAATTAATTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAAATTCTATAGGACCGAAGCTGATCCATGAAAACAACAGATCACGGAAAACAGTAAACAGGAATGTAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATCACAGGATAAGAGGAAAATTTCCATGCAAACAAGAGTGGGGGAACTGAACCTAGGTGTGACTCAGAATCAGTCACCAAATAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCCGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGTAGAAACTGATCTGTTTAGGTGTTCTAATCATCTTGCTGCCAGTGGAATGCTTGTCTGCTCACTTTGTAAAGATGCGCTAGTGAAGTTTCCACCAGATACTGTCAAGATGAAGAAACCTATCCATTTGCAACCATGGGACTCCTCTCCTGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCCATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGATTCAATGTTACTTGGCAAGATTCATGTAGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTAACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGTAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCCTGAAGAGTGAGTTGTTTAATATTTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGTTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACTAGAGAGGAACTTGAGTCTTTAATATGTTCTACTCTGTCAAGTGATATTACTTTATTTGAAAAGATTTCATCGACTGCTTACCGACTGCGAATGAGCACAGTTACGAAGGACAGTGATGAATCTCATTCAGATACGGAGTACTCTGGTAGTGTTGATGATGAACTTGATGACACTGATACATGCAGCAGTGCTGATGATTTTGAAAATGATTCAATTAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAATAATATGCGGAAAATATACACTGAAATTGATGAGAGCCGTTCCGGAGAAGCATGGTTGTTAGGACTGATGGAGAGTGAATATTCGAACTTAAAAATTGAAGAAAAATTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTTTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACCAGGATCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGGGTCCCTTTTGAACCATAAAGTACACTTGAATTCTGATCCCTGTAGTGTAGACTCCTCATCATTATTCTCAAGATTCCACAGTTATGAAGCTTACTTCCAAAAGGGAAACGGTCCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCATGTAATGTAGATGATCCTGGTCACAGGAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCGTTATGTGCATTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCCGATCTATGGCCAGGATTAAACTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACCGAGACAGCTAAAGACACCTTTCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTAATTAAAAAATGGATCCGTGTTCAAGAATACGATTCTTGGATTTGGAATTCTTTTTACTCAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTACATGGACTCTCTTGCCAAATGCAAGAGTTGTCATGATCTTTACTGGCGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAAATATGCTATCCACATAGCCACATGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCTCAACTTTAGTGGAGCTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGATGTGTTTGAAGAAATCATTTCATCGTTTGCATCTATGCCCCGTACATCATCCGCCCTAGGTTTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCGGTCAACATGGTCCTTGGCGATAG 3234 0.4113 MEDYDTRRDNGGSGVAVPPCTCSGEEFRASGGGKGSLRVVAAARNGSSVSNYDMAVSRNVKKTQKRKGLQELFTADYIVNRVLRKDGPSLGQEFDFLPSGPRHTSACQEDQGSSKKRKGSKSAIRSLTDCNRTAPVKKHGIGKGLMTVWRATNPDAGDLPINFGVDGQEVPLLSNSIGPKLIHENNRSRKTVNRNVMPKNKMQNKRNKSQDKRKISMQTRVGELNLGVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQVETDLFRCSNHLAASGMLVCSLCKDALVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVVELAKSMQIVELNLASTREELESLICSTLSSDITLFEKISSTAYRLRMSTVTKDSDESHSDTEYSGSVDDELDDTDTCSSADDFENDSINSSIRKLKSVNSHKNNMRKIYTEIDESRSGEAWLLGLMESEYSNLKIEEKLNALAALTDLVSSGSSVRMKDFSKVSADCNSSIQLPGSGAKIKRSVVKKPGSLLNHKVHLNSDPCSVDSSSLFSRFHSYEAYFQKGNGPSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSVLDDRGKREALLIESLERRQTSLCRSMARIKLNSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDTFPSAGAVVIEAGKKVEDLIKKWIRVQEYDSWIWNSFYSDLNVVKYGRRSYMDSLAKCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDDVFEEIISSFASMPRTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTGQHGPWR 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8411g00006 1077 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 598 637 IPR028942 -
Vium8411g00006 1077 SMART testlast3 319 378 IPR018501 -
Vium8411g00006 1077 MobiDBLite consensus disorder prediction 530 546 - -
Vium8411g00006 1077 Coils Coil 251 271 - -
Vium8411g00006 1077 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 715 788 IPR028941 -
Vium8411g00006 1077 MobiDBLite consensus disorder prediction 96 127 - -
Vium8411g00006 1077 Pfam DDT domain 322 375 IPR018501 -
Vium8411g00006 1077 PANTHER HOMEOBOX PROTEIN SIX 210 1054 - -
Vium8411g00006 1077 MobiDBLite consensus disorder prediction 530 553 - -
Vium8411g00006 1077 ProSiteProfiles DDT domain profile. 319 378 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8411g00006 Vium-Chr8411 37747 47293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8411g00006 240 1055 Homeobox Transcription Factor Family AT1G28420 26.316 2.30e-73 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium8411g00006 WSD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8411g00006 - - gmx:100792062 1816.59