Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8411g00005 ATGGCTTTATCTCTACCTACTCATTCTTCTCGCTCCCTCCTCCCTCTTCCACCGTCCACCAAACCCACTTTCCCCACCCTCCGCCGCCTCAACCACCGCGTTTCACTCGTTACTGCTTCCATTCCCCTGCTCCAAGTCAATGACCTTAGAGCCAAGATCATCGAGTCTAACGTCCAGATTCTCCATGGCGTTAACCTCACCGTTAACCAAGGAGAGGTCCACGCCATCATGGGAAAAAATGGCTCTGGCAAAAGTACTTTCGCCAAGGTTCTAGTAGGGCACCCTGATTATGAAGTTACCGGAGGCAGTGTTGTATTCAAAGGGGAGAATTTGCTTGAAATGGAACCCGAAGAAAGGTCTCTTTCGGGTCTCTTCATGAGTTTCCAATCCCCCGTTGAAATTCCTGGTGTTTCCAATGATGAGTTTCTTGTAATGGCCTACAATGCTCGAAGGAAAAAGCTTGGTCTACCTGAGCTTGGTCCACTCGAGTGTTTTTCTTACCTGATGGAGAAGCTTAAGCTTGTTAATATGAAGCCTGATTTTCTCAATAGGAATGTGAATGAAGGGTTTAGTGGCGGTGAACGCAAACGCAATGAAATCTTGCAGCTTGCAGTTTTGGGGGCGGATTTGGCTATTTTGGATGAGATTGACTCTGGGTTGGATGTTGATGCGCTTAGGGATGTTGCCAGTGCCGTTAATCGGATTCTCACCCCACAAAATTCTTTGATGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAATGGAAAAATTGCAAGAACAGGTGACATATCAATGGTAGAAACTATTGAGGCAGAGGGATATGAAACTGTCTCCACTTCAACATAA 879 0.4562 MALSLPTHSSRSLLPLPPSTKPTFPTLRRLNHRVSLVTASIPLLQVNDLRAKIIESNVQILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLSGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNRILTPQNSLMMITHYRRILDLLNPTHVHVMDNGKIARTGDISMVETIEAEGYETVSTST 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8411g00005 292 Gene3D - 43 291 IPR027417 -
Vium8411g00005 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 275 IPR027417 -
Vium8411g00005 292 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Vium8411g00005 292 SMART AAA_5 70 267 IPR003593 GO:0016887
Vium8411g00005 292 Pfam ABC transporter 61 215 IPR003439 GO:0005524
Vium8411g00005 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
Vium8411g00005 292 MobiDBLite consensus disorder prediction 1 17 - -
Vium8411g00005 292 MobiDBLite consensus disorder prediction 1 22 - -
Vium8411g00005 292 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 37 290 IPR010230 GO:0005524
Vium8411g00005 292 CDD ABC_FeS_Assembly 44 285 IPR010230 GO:0005524
Vium8411g00005 292 NCBIfam Fe-S cluster assembly ATPase SufC 44 287 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8411g00005 Vium-Chr8411 32254 35161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8411g00005 57 272 Calmodulin-binding Proteins AT2G36910 24.017 2.86e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8411g00005 K09013 - gmx:100811883 465.692