Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00050 ATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCGAATTCGGATATTTTTGAGATAATTGAAAACGCCATAATCGTGGCGGCTACGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATGCGATTGCAGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGCGGGTTGTGACCGTGTGGAGTTGGCTGCGAGGGGAGTTGGTAAAGAGAGTGATGATGAAGGCTGCAAGAATGGGGTAGAAAGAAATGCGGGTGAGTTCGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAGATGAGGATGCAGAGATTGATGTGAATGGTGTTAGCAACTACAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATATGGGGGAGGTTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAAGAGTCTGAGTCTGTCTTATTTGAATCGTTGAGGATGCTTCAGCTGATGGAGCTAACAGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAACGAGGATCAAAGGAAATTCGTCAACTTGCAAAAACTCTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACCACAGCTATTGCAGCTTCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCGCCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATGGAACTTTCTCAGTTTTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGTCCATCCCACAAGAACCGTCTCAATAATGGCAGAAAGCCAGCAGCCATCCCTAATAGGGAGGATAAGAGTCAACAAGCAAAGAGAAATGTGGCTGATGTGCCAGTGAGGCCAAATAAGCCAGTAAGCTCTGATTCTGGCCCTGGCAGACCCCTCCCATCTAATAATATGCAGAGAAAAAGTAATGTGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCCCAAGGAGGCATCCCGTTGGTCATCTAGATAAACCCATGCATTCAGATGATGCGGCTGTCCAAGCAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAATTATCAACAGGCTGAAAAAGCCAAGAGACAGAGAACAATCCAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCAAATGCGAAGCCTGGTTTTCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1317 0.4586 MKSWSVDEWREYFVSSNSDIFEIIENAIIVAATDCPKEFRVKRDAIAERLFCSRLTRCAGCDRVELAARGVGKESDDEGCKNGVERNAGEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYMGEVLRIKDVLLNREEESESVLFESLRMLQLMELTVDCLKATEIGKAVNPLRKRGSKEIRQLAKTLIDGWKQMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSMELSQFFDGMDDDGNPRPSGPSHKNRLNNGRKPAAIPNREDKSQQAKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSIPRRHPVGHLDKPMHSDDAAVQAKLEATKRRLQENYQQAEKAKRQRTIQVMEINDLPKHVNYRNPNAKPGFHNRNRANTRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00050 438 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 423 IPR044805 -
Vium840g00050 438 SMART TFS2_5 137 212 IPR003617 GO:0005634
Vium840g00050 438 MobiDBLite consensus disorder prediction 330 357 - -
Vium840g00050 438 MobiDBLite consensus disorder prediction 222 376 - -
Vium840g00050 438 CDD TFIIS_I 139 211 - -
Vium840g00050 438 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Vium840g00050 438 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
Vium840g00050 438 MobiDBLite consensus disorder prediction 413 438 - -
Vium840g00050 438 Coils Coil 379 406 - -
Vium840g00050 438 MobiDBLite consensus disorder prediction 359 376 - -
Vium840g00050 438 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Vium840g00050 438 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00050 Vium-Chr840 410591 415069 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium840g00050 Med26 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00050 - - gmx:100799367 625.165