Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00049 ATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCGAATTCGGATATTTTTGAGATAATTGAAAACGCCATAATCGTGGCGGCTACGGATTGTCCGAAGGAGTTTAGAGTGAAGAGGGATGCGATTGCAGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGCGGGTTGTGACCGTGTGGAGTTGGCTGCGAGGGGAGTTGGTAAAGAGAGTGATGATGAAGGCTGCAAGAATGGGGTAGAAAGAAATGCGGGTGAGTTCGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAGATGAGGATGCAGAGATTGATGTGAATGGTGTTAGCAACTACAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATATGGGGGAGGTTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAAGAGTCTGAGTCTGTCTTATTTGAATCGTTGAGGATGCTTCAGCTGATGGAGCTAACAGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAACGAGGATCAAAGGAAATTCGTCAACTTGCAAAAACTCTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACCACAGCTATTGCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCGCCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATGGAACTTTCTCAGTTTTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGTCCATCCCACAAGAACCGTCTCAATAATGGCAGAAAGCCAGCAGCCATCCCTAATAGGGAGGATAAGAGTCAACAAGCAAAGAGAAATGTGGCTGATGTGCCAGTGAGGCCAAATAAGCCAGTAAGCTCTGATTCTGGCCCTGGCAGACCCCTCCCATCTAATAATATGCAGAGAAAAAGTAATGTGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCCCAAGGAGGCATCCCGTTGGTCATCTAGATAAACCCATGCATTCAGATGATGCGGCTGTCCAAGCAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAATTATCAACAGGCTGAAAAAGCCAAGAGACAGAGAACAATCCAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCAAATGCGAAGCCTGGTTTTCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1311 0.4584 MKSWSVDEWREYFVSSNSDIFEIIENAIIVAATDCPKEFRVKRDAIAERLFCSRLTRCAGCDRVELAARGVGKESDDEGCKNGVERNAGEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYMGEVLRIKDVLLNREEESESVLFESLRMLQLMELTVDCLKATEIGKAVNPLRKRGSKEIRQLAKTLIDGWKQMVDEWVKATATTAIADEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSMELSQFFDGMDDDGNPRPSGPSHKNRLNNGRKPAAIPNREDKSQQAKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSIPRRHPVGHLDKPMHSDDAAVQAKLEATKRRLQENYQQAEKAKRQRTIQVMEINDLPKHVNYRNPNAKPGFHNRNRANTRR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00049 436 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 421 IPR044805 -
Vium840g00049 436 SMART TFS2_5 137 212 IPR003617 GO:0005634
Vium840g00049 436 MobiDBLite consensus disorder prediction 328 355 - -
Vium840g00049 436 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Vium840g00049 436 CDD TFIIS_I 139 211 - -
Vium840g00049 436 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 222 IPR035441 -
Vium840g00049 436 MobiDBLite consensus disorder prediction 411 436 - -
Vium840g00049 436 Coils Coil 377 404 - -
Vium840g00049 436 MobiDBLite consensus disorder prediction 357 374 - -
Vium840g00049 436 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
Vium840g00049 436 MobiDBLite consensus disorder prediction 224 374 - -
Vium840g00049 436 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00049 Vium-Chr840 410591 415069 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium840g00049 Med26 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00049 - - gmx:100799367 619.002