Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00047 ATGGATTCGGGAGACGACGAGACAGGTTCGGCCTCCTCATCGTCTGAAATATTCCTTCTCGGCTTCATCGAGGCCAACATCGTCGGTGTGCAGCACTATCACGCCACCATCAGCGGCCGCGCCGTCGTCGTCCTTCACCGTGAGCCCGACAACGTCCACGATGCCAACGCCATCAAAGCCAGCAACATCCACGGGGACCACGTCGGTTACATTGAACGCGCCGTCGCAGCCGTCCTCACCCCTCTCATCGACGACGAACTTATCACCGTCGAAGCCATCGTACCCGACGCCCGCAAAACCTACCGAATCCTCTGCCAAATCCACATCTTCGCTCGCCTCCAAGACTTTGACTTCGTCAAATGTGCCCTTTCCCGTTGCCCCTGCAGACTCATCAACGAATCCGAGGCCGCCTTCACCCTCTCTGACTCCGCCGCCGTTAAAGCCACCAAGGCGGTGAAGAAGACCATGACCGTCGACGCCATTTTCAGCCTCATGAACAGCTACCTTGCCAATAAGAACCGCGCCATCGATTTCTTGGAGCCTCCGAGGAGCATCATCAGAACCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCTGGTGGCTCGTTCGCAGAGAAAAAATTGATGACTTGCCACCCTTTTGGGAAGAAAACGATGGGAAGTTCGTAAATGTTTTAACCGATTATCAGACCGATAAAAGGCCTGACCCCTTGCGAGGTGGTATCTTCGCCGATGAGATGGGGTTGGGAAAGACCTTAACTCTGCTTTCTCTGATTGCTTTTGATAAATGGAGCCAAATGGGTTTCTCTAAGAAATGTAGAACGGATGGAAAGTGGGTTTCTTTAGAGAAGCGACGCAGGAATGAAATTGAGGGCTCCCGTGGAACCGAATTGAGAACAAATGCAACGTTGGTGGTGTGTTCTCCTTCTGCTATGTCGGCATGGATAACGCAATTAGAGGATCACACTGTACCTGGTGCATTGAAGACTTACATGTATTACGGGGAAAGAAGGACAGAGGACACTGAGGAGCTTAAGAAGTATGATTTGGTATTGACTACTTACACTACTTTGTCCAATGAATTGGACGAGATGCCGGCGAAGCAAATGGAGTGGCGGAGAATTATATTGGACGAAGCACACACCATCAAGAATTTCACTGCTAACCTGAGTAAGACGGTTTTCAGGTTGAAAGGTCAGTACAGATGGGCTGTCACAGGGACACCGATTCAAAGTGGTTGCATTGATTTGTATTCTTTTATGGTCTTTTTGCGGTTTCAGCCGTTTTCGGAACGAAGACATTGGAGAATTTTGGTGCAAACCCCTCTTAATCTGGGCTTGGAAAACGGGTTCACACGGTTGCAGGTTTTGATGGGAGCAATTGCTTTGCGAAGAACAAAAGAGTTGGCATTGACGTTTCTGCCACCCAAAACCGTTGAGATTTGTTATGTTGGGCTTTCTATGGAAGAACGGCAGCTGTATGAGAGGGAGAAAGAGAAAATAAAGGCATCGTTGAGAAGAGGTTATATCCGTGAGAGCAATCCACTTTCCGAGTCTAGCGAAGTGCTAAATAGTTTTCTATTACTCCGTCAAATCTGTGTTGATTTGAAATTGTGTAAATTTCAGTCAGAAAGTGAAGGAGAAACAATTATATCTTATAATCCCGAGTTGCTGCAAAAATTACTTGGACAGCTGGAAGAAGGTGAAGATTTTGAATGTCCAATCTGTTTATCTCCTCCAATGGAAATTGTGATCACACGTTGTGCTCACATTTTCTGTCGTCCGTGTATACTGAGATCTCTAGAAGAGAGGAAAAAAAGTGGTTGTCCTCTTTGTCGGCAAAAACTCTCATCAGAATCTGATATATTCTCACCACCTCCCCAGCCAGAGACAGACACTGCTGAACTGAGCTCAGCCTCAGAAAAACCGCTATCGTCCAAGGTTTCTGCTCTGATAAAATGTCTGGATGAATCAAGAGACCAAAATCCAGGTGTGAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGCTGTGTTTACTTGAAGAGCCTCTGAATGCAGCTGGTTTCAAGACTCTGCGTCTTGATGGGAAAATGAATGCTAAACAGAGAGCCAATGTTATTCTGCAGTTTCAAGCCCGAGAAAGTGGTTGTTGTCCAACTGTTCTACTTGCAAGCCTGAGGGCTTCAAGTGCAGGTGTAAATCTGACAGCTGCCTCTAGACTCTACTTTATGGAACCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAACCAGCCCGTGAAGATTGTTCGATTCATTGCTCAAAACAGCTTTGAGGAGAAAATGTTGGTGTTGCAGGAAAGGAGGAAACTACTGTTGAAAGAACCATATGGGACGGAAAGAAAGGGCATTGGCTATCTAGATTTGAAATTCCTTCTAGATTCTTAG 2451 0.4696 MDSGDDETGSASSSSEIFLLGFIEANIVGVQHYHATISGRAVVVLHREPDNVHDANAIKASNIHGDHVGYIERAVAAVLTPLIDDELITVEAIVPDARKTYRILCQIHIFARLQDFDFVKCALSRCPCRLINESEAAFTLSDSAAVKATKAVKKTMTVDAIFSLMNSYLANKNRAIDFLEPPRSIIRTELLPHQKEGLWWLVRREKIDDLPPFWEENDGKFVNVLTDYQTDKRPDPLRGGIFADEMGLGKTLTLLSLIAFDKWSQMGFSKKCRTDGKWVSLEKRRRNEIEGSRGTELRTNATLVVCSPSAMSAWITQLEDHTVPGALKTYMYYGERRTEDTEELKKYDLVLTTYTTLSNELDEMPAKQMEWRRIILDEAHTIKNFTANLSKTVFRLKGQYRWAVTGTPIQSGCIDLYSFMVFLRFQPFSERRHWRILVQTPLNLGLENGFTRLQVLMGAIALRRTKELALTFLPPKTVEICYVGLSMEERQLYEREKEKIKASLRRGYIRESNPLSESSEVLNSFLLLRQICVDLKLCKFQSESEGETIISYNPELLQKLLGQLEEGEDFECPICLSPPMEIVITRCAHIFCRPCILRSLEERKKSGCPLCRQKLSSESDIFSPPPQPETDTAELSSASEKPLSSKVSALIKCLDESRDQNPGVKSVVFSQFRKLLCLLEEPLNAAGFKTLRLDGKMNAKQRANVILQFQARESGCCPTVLLASLRASSAGVNLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQNQPVKIVRFIAQNSFEEKMLVLQERRKLLLKEPYGTERKGIGYLDLKFLLDS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00047 816 Pfam Zinc finger, C3HC4 type (RING finger) 572 611 IPR018957 GO:0046872
Vium840g00047 816 Pfam SNF2-related domain 193 535 IPR000330 GO:0005524|GO:0140658
Vium840g00047 816 Gene3D - 225 465 IPR038718 -
Vium840g00047 816 Gene3D - 11 130 - -
Vium840g00047 816 SUPERFAMILY RING/U-box 555 621 - -
Vium840g00047 816 Gene3D - 474 804 IPR027417 -
Vium840g00047 816 ProSiteProfiles Zinc finger RING-type profile. 572 612 IPR001841 -
Vium840g00047 816 SMART ring_2 572 611 IPR001841 -
Vium840g00047 816 Pfam Helicase conserved C-terminal domain 646 763 IPR001650 -
Vium840g00047 816 SMART ultradead3 186 435 IPR014001 -
Vium840g00047 816 CDD SF2_C_SNF 640 774 - -
Vium840g00047 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 622 IPR013083 -
Vium840g00047 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 468 IPR027417 -
Vium840g00047 816 MobiDBLite consensus disorder prediction 619 641 - -
Vium840g00047 816 ProSitePatterns Zinc finger RING-type signature. 587 596 IPR017907 -
Vium840g00047 816 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 813 IPR001650 -
Vium840g00047 816 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium840g00047 816 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 426 IPR014001 -
Vium840g00047 816 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 165 799 - -
Vium840g00047 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 814 IPR027417 -
Vium840g00047 816 SMART helicmild6 677 763 IPR001650 -
Vium840g00047 816 Pfam HIRAN domain 20 107 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00047 Vium-Chr840 364875 367961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00047 15 803 RAD5 or RAD16-like Gene Family AT5G05130 52.387 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium840g00047 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00047 K15711 - gmx:100791783 989.178