Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00046 ATGGCATCAAGTTCAATGTCAGCCTCAGGCTCATGGAGTGTCAAGGACAACAAGGCCTTTGAGAAGGCTCTAGCTGTTTACGACAAGGACACCCCTGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTGAAGAGACACTATGAACTCCTTGTCCAGGATGTTAAACACATTGAGTCAGGACGAGTGCCATTCCCAAATTACAAGAAAACTGCATCCTCTGATCAGGAGGAGAAAAGACTGAGGAATTTGAACCTCCAGTGA 282 0.4716 MASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTASSDQEEKRLRNLNLQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00046 93 CDD SANT 18 58 IPR001005 -
Vium840g00046 93 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vium840g00046 93 FunFam Transcription factor SRM1 4 71 - -
Vium840g00046 93 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vium840g00046 93 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vium840g00046 93 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vium840g00046 93 MobiDBLite consensus disorder prediction 72 93 - -
Vium840g00046 93 MobiDBLite consensus disorder prediction 78 93 - -
Vium840g00046 93 Gene3D - 2 71 - -
Vium840g00046 93 SMART sant 8 60 IPR001005 -
Vium840g00046 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 84 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00046 Vium-Chr840 359388 360335 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium840g00046 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00046 - - gmx:100818368 177.563