Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00045 ATGTTTCCCCAGCCATGGTTCTTCTTAGCCACAATCATTGCAACTTCACTGCTCATGTCCTCACTGGTAAAGTCATTTCCAGAAGCTGATAAGGTGAAACACTTGCCTGAACAGTCACCTGTTTCCTTCCAACAATTTGCTGGCTATGTACCCGTTGATGACAATGATCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCACAAAGGAACCCTTCTTCGAAGCCTCTAGTTCTCTGGCTCAATGGAGGGCCTGGCTGCACATCTGTTGGAATTGGAGCCTTCACCGAACATGGTCCTTTTGTTACAAATCAAGGAAAGGCTATTCAAAAAAATCAGTATAGTTGGAACAAAGAGGCAAACATTTTGTACCTGGACTCACCAGCAGGTGTTGGATTCTCTTACTCTCTCAATTTGTCATTTTATAAAGCTCTGAACGATGAAGTAACAGCCCGAGACAGTCTAGTTTTCCTGCAGCGCTGGTTTGCCAAGTTCCCAGAATACACAAACAGGGACTTTTATATAATGGGAGAGAGTTATGGAGGTCACTATGTACCTCAACTGGCTGAACTCATTATTAAGAGTAATTTAAATTTCAACCTAAAGGGCATAGCAATAGGAAATCCCCTTCTGGATTTTGACACTGATATGAATGCAGTTGATGAATATTACTGGTCTCATGGAATCATAACTGATCATGCATACAAAATCAAGATCTCTCTGTGTAACTCATCCAGACTATTAAGAGAATACTTCAGTGGCCGTCAACTTTCCAACGATTGTCTTCTTGCAGCTCAAAAAGTCTCAGAAGAATATTCTTTTACATCCTTCATAGATCCATATTACGTCATCGGCGATAGATGTCTTTCTTACAATGTTTCTCAGGCAGCTTTTCTTAAGGAGATGCTAAGTTCAGGGTTGTTTCAGTTTAGGAACTCCCATGATGTGCTTCAAACCCAAAAACCAGACCAGCAAGTTGACGAGTGTAGTATGAAATATTCAGAGAAGTACTTGAACAGGAAAGATGTGCAGAAGGCTCTTCATGCCCGGGTGGTGGGAACTAGCAATTATCGTTTGTGCAGCAGGATTGTACTCACAAATTATGACCCATCCAACAGAGAGATACCGACAATTAATGTTGTCGGCTTCCTTGTAAAATCAGGTCTTCGAGTCATCGTTTACAGTGGGGACCAAGACTCTGTGATTCCATTCATGGGCACCAGAAGATTAGTTGATAAACTTGCAAAGAAAGTTGGCCTTAAAACCACAGTGCCTTACAGTGCCTGGTTTGTGGACAAACAGGTTGGAGGATGGGCACAAGTTTTTGGGAATCACCTCACCTATGCCATGGTGAGAGGAGCTTCACATGGCACTCCAACTACCCAGCCAAAGAGATCTTTTGCTTTGTTTGATGCTTTTCTCCATGGCAAACCGCTGCCTAAAGCATGA 1446 0.4232 MFPQPWFFLATIIATSLLMSSLVKSFPEADKVKHLPEQSPVSFQQFAGYVPVDDNDQRALFYYFVEAQRNPSSKPLVLWLNGGPGCTSVGIGAFTEHGPFVTNQGKAIQKNQYSWNKEANILYLDSPAGVGFSYSLNLSFYKALNDEVTARDSLVFLQRWFAKFPEYTNRDFYIMGESYGGHYVPQLAELIIKSNLNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIITDHAYKIKISLCNSSRLLREYFSGRQLSNDCLLAAQKVSEEYSFTSFIDPYYVIGDRCLSYNVSQAAFLKEMLSSGLFQFRNSHDVLQTQKPDQQVDECSMKYSEKYLNRKDVQKALHARVVGTSNYRLCSRIVLTNYDPSNREIPTINVVGFLVKSGLRVIVYSGDQDSVIPFMGTRRLVDKLAKKVGLKTTVPYSAWFVDKQVGGWAQVFGNHLTYAMVRGASHGTPTTQPKRSFALFDAFLHGKPLPKA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00045 481 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vium840g00045 481 FunFam Carboxypeptidase 25 479 - -
Vium840g00045 481 SUPERFAMILY alpha/beta-Hydrolases 22 479 IPR029058 -
Vium840g00045 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 462 IPR001563 GO:0004185|GO:0006508
Vium840g00045 481 Gene3D alpha/beta hydrolase 22 479 IPR029058 -
Vium840g00045 481 Pfam Serine carboxypeptidase 38 475 IPR001563 GO:0004185|GO:0006508
Vium840g00045 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vium840g00045 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vium840g00045 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Vium840g00045 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00045 Vium-Chr840 328280 331195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00045 386 478 Calmodulin-binding Proteins AT2G22960 30.108 2.74e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00045 K16297 - gmx:100819443 851.662