Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00040 ATGTTATCTCATTCATTTACTATGATTGCAACAATAATCATTGTTCTTGCACAAACACTTGTGGGGGTGACTTCACTTCCTGCATCTGATAAAATTAGCAGTTTGCCAGGACAGCCACATGTTAAGTTTCAGCAATATTCTGGTTACATTACAGTGGATGACCAACATCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTCAAAAAGATCCTACTTCCAAACCATTAGTTCTCTGGTTGAATGGAGGTCCTGGTTGTTCATCTGTTGGAGTTGGAGCTCTAATTGAGCATGGCCCTTTCAAACCGAGAGACAACAATGTTCTTGAAAAGAATCATTATAGTTGGAACAAAGTGGCAAATGTGCTGTACTTGGAATCACCGGCTGGTGTTGGATTTTCCTACTCTAGCAATAAATCTTTCTATACCTTGGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTACAACGCTGGTTCATTGAATTCCCTGAGTACTCAAACAACAACTTTTTCATTACAGGGGAGAGCTATGCTGGTCACTATGCTCCACAACTTGCCCAACTTATTGTTCAAACCAAGAGCAACATCAATCTCAAGGGAATAGCAATTGGGAATCCTCTGATGGAATTTGACACTGATTTGAACTCCAAAGCAGAATTCTTTTGGTCCCACGGACTGATTTCAGATCCAACTTATGATCTCTTCACCAGAGTCTGCAACTATTCAACCATTAGGAGACAAATGATAAGTAGGAATCTTAGTGAAATTTGTGAAAACATAAATACATTGGTGTTCACTGAGGTTAGCAACTATATAGATCAATATGATGTCACTCTTGATGTGTGTTTGTCATCAGTAAATGAACAGGCCTATGTGCTGAATCAAATGCAAAAGATACAGAAGATAGATGTTTGTGTGGATGATAAAGCAGTCAACTACTTAAACAGGAAAGATGTGCAGGAGGCTCTCCATGCTAAGCTTGTTGGAGTATCCAAATGGTCAACTTGCAGCAAGGTTCTCCACTATGACCGTACAAATCTAGAGATACCAACAATTTCTATTTTAGGATCATTAGTTAATTCCAAAATCAGAGTTCTGGTATATAGTGGAGATCAAGACTCAGTTATTCCATTAATTGGATCTCGATCTTTGGTGAATGGATTGGCCAAGGAACTTGGACTCAATACAACAGTAGCGTACAGAGCCTGGTTTGAAGGAAGACAGGTAGGAGGATGGACACAAGTGTACGGAGACATCTTATCTTATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCAAAAAGATCACTAAGGCTACTTAAAGCATTTCTCGAAGGAAAGCCACTTCCTGCTGTTAAATAA 1380 0.3928 MLSHSFTMIATIIIVLAQTLVGVTSLPASDKISSLPGQPHVKFQQYSGYITVDDQHQRALFYYFVEAQKDPTSKPLVLWLNGGPGCSSVGVGALIEHGPFKPRDNNVLEKNHYSWNKVANVLYLESPAGVGFSYSSNKSFYTLVTDEITARDNLVFLQRWFIEFPEYSNNNFFITGESYAGHYAPQLAQLIVQTKSNINLKGIAIGNPLMEFDTDLNSKAEFFWSHGLISDPTYDLFTRVCNYSTIRRQMISRNLSEICENINTLVFTEVSNYIDQYDVTLDVCLSSVNEQAYVLNQMQKIQKIDVCVDDKAVNYLNRKDVQEALHAKLVGVSKWSTCSKVLHYDRTNLEIPTISILGSLVNSKIRVLVYSGDQDSVIPLIGSRSLVNGLAKELGLNTTVAYRAWFEGRQVGGWTQVYGDILSYATIRGASHEAPFSQPKRSLRLLKAFLEGKPLPAVK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00040 459 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vium840g00040 459 SUPERFAMILY alpha/beta-Hydrolases 33 456 IPR029058 -
Vium840g00040 459 Gene3D - 354 452 - -
Vium840g00040 459 Gene3D - 307 344 - -
Vium840g00040 459 Gene3D alpha/beta hydrolase 27 286 IPR029058 -
Vium840g00040 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Vium840g00040 459 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 439 IPR001563 GO:0004185|GO:0006508
Vium840g00040 459 FunFam Carboxypeptidase 353 452 - -
Vium840g00040 459 FunFam Carboxypeptidase 25 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00040 Vium-Chr840 311501 313923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00040 312 455 Calmodulin-binding Proteins AT2G22960 29.252 1.83e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00040 K16297 - gmx:100793889 824.313