Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00030 ATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTTACTGGGCACAAGAATCTGGTGCAATTCTATGATGCCTATGAAGACAATGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTTGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCAAGGATTGTTATGATTCAGATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTCTATATTTCTACGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTCTCTGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCGAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCATCTTTATCAGCTGATGCAGTAGATTTTGTAAAGCGACTGTTGAACAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAGTTCAACATGTTAGGGCCAAACAAAAGTGGGTTAATCTCCATGCAGAACTTCAAGACGGGTATTTTGAGGAGTGCCACCGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTTAACATGGTTAGTTCAATCCAATATCGCAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAGCTAGAGGGAGTGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGTCTTAGCCCTTCAGTACCAATTCATGTGGTGCTGCAAGATTGGATAAGACACTCAGATGGGAAGCTGAGCTTCTTGGGGTTTGTTAGACTCCTCCATGGGGTTTCTTCTCGCACGTTTCAGAAGGCTTGA 1251 0.4165 MTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISTDENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTGILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGVESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00030 416 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 392 - -
Vium840g00030 416 FunFam CDPK-related kinase 1 52 240 - -
Vium840g00030 416 SMART serkin_6 3 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00030 416 Gene3D - 250 404 - -
Vium840g00030 416 Gene3D Phosphorylase Kinase; domain 1 3 51 - -
Vium840g00030 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vium840g00030 416 CDD STKc_CAMK 6 223 - -
Vium840g00030 416 Pfam Protein kinase domain 8 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00030 416 SUPERFAMILY Protein kinase-like (PK-like) 6 253 IPR011009 -
Vium840g00030 416 SUPERFAMILY EF-hand 254 407 IPR011992 -
Vium840g00030 416 ProSiteProfiles EF-hand calcium-binding domain profile. 267 302 IPR002048 GO:0005509
Vium840g00030 416 FunFam CDPK-related kinase 1 2 50 - -
Vium840g00030 416 Gene3D Transferase(Phosphotransferase) domain 1 52 242 - -
Vium840g00030 416 FunFam CDPK-related kinase 1 236 408 - -
Vium840g00030 416 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00030 416 Gene3D - 245 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00030 Vium-Chr840 188219 192442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00030 1 414 EF-hand Containing Proteins AT3G50530 70.787 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium840g00030 Pkinase 4.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00030 K13412 - gmx:100803625 793.112