Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00029 ATGGGGCTGTGTCATGGAAAACCCGTTGAAACCTCACGAAGTGAAGGTGGGCACCACGTTTTCCCCGGCGAGAAAGAGGTGGTGGTGGCAGCGAGTCCCAAAACCTCCACGAAAGGTTCAAAGTTTCCGTTTTACAGCCCAAGCCCGTTGCCGAGCCTGTTCAAGAACTCGCCGGCGAACTCTAGTGTGAGTTCGACTCCTCTGCGGCTCTTCAAGCGGCCCTTTCCGCCTCCGTCGCCGGCGAAGCACATTCGGGCCTTACTGGCCCGCCGCCACGGCTCCGTCAAGCCCAATGAAGCCTCCATCCCAGAAGGGAGTGAGTGTGAGGTTGGGCTCGACAAGAGCTTCGGCTTCTCCAACCACTTCCACACTCACTATGAGCTTGGGCCCGAAGTGGGCCGTGGTCACTTTGGCTACACTTGCTCTGCCAAGGGAAGAAAGGGCACCTTCAAGGGTCATGATGTTGCTGTCAAAGTCATTCCAAAGTCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTTACTGGGCACAAGAATCTGGTGCAATTCTATGATGCCTATGAAGACAATGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTTGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCAAGGATTGTTATGATTCAGATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTCTATATTTCTACGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTCTCTGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCGAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCATCTTTATCAGCTGATGCAGTAGATTTTGTAAAGCGACTGTTGAACAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAGTTCAACATGTTAGGGCCAAACAAAAGTGGGTTAATCTCCATGCAGAACTTCAAGACGGGTATTTTGAGGAGTGCCACCGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTTAACATGGTTAGTTCAATCCAATATCGCAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAGCTAGAGGGAGTGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGTCTTAGCCCTTCAGTACCAATTCATGTGGTGCTGCAAGATTGGATAAGACACTCAGATGGGAAGCTGAGCTTCTTGGGGTTTGTTAGACTCCTCCATGGGGTTTCTTCTCGCACGTTTCAGAAGGCTTGA 1743 0.4607 MGLCHGKPVETSRSEGGHHVFPGEKEVVVAASPKTSTKGSKFPFYSPSPLPSLFKNSPANSSVSSTPLRLFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSNHFHTHYELGPEVGRGHFGYTCSAKGRKGTFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISTDENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTGILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGVESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00029 580 SMART serkin_6 126 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00029 580 ProSitePatterns Protein kinases ATP-binding region signature. 132 158 IPR017441 GO:0005524
Vium840g00029 580 SUPERFAMILY EF-hand 418 571 IPR011992 -
Vium840g00029 580 Gene3D - 409 498 - -
Vium840g00029 580 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 556 - -
Vium840g00029 580 Gene3D Transferase(Phosphotransferase) domain 1 213 406 - -
Vium840g00029 580 FunFam CDPK-related kinase 1 119 214 - -
Vium840g00029 580 Gene3D Phosphorylase Kinase; domain 1 122 212 - -
Vium840g00029 580 FunFam CDPK-related kinase 3 118 290 - -
Vium840g00029 580 CDD STKc_CAMK 125 387 - -
Vium840g00029 580 SUPERFAMILY Protein kinase-like (PK-like) 118 417 IPR011009 -
Vium840g00029 580 ProSiteProfiles Protein kinase domain profile. 126 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00029 580 FunFam CDPK-related kinase 1 400 572 - -
Vium840g00029 580 FunFam Calcium-dependent protein kinase SK5 298 393 - -
Vium840g00029 580 Pfam Protein kinase domain 126 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium840g00029 580 MobiDBLite consensus disorder prediction 1 22 - -
Vium840g00029 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vium840g00029 580 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Vium840g00029 580 Gene3D - 414 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00029 Vium-Chr840 188219 193669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00029 1 578 EF-hand Containing Proteins AT3G50530 66.142 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium840g00029 Pkinase 4.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00029 K13412 - gmx:100803625 1093.18