LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium840g00028	ATGCCTTACACGGTACGAGAGAACCTCTCGATCGGTAACATCGGCGACGCGGCCGGGATTCTTCAAAACGACACCGTTCACAGTGTCACGCACATTCTCTCCGTCCTCAGCTCTGCCTCCATCTCCTTCTTCACTGAATGGCGTCCCAGTCTCTCCATCCCTGCCAAGGAAATCACCAAAGTCCATGTGGCGGACGCCGGTGCTAGTGCCGCCAAATCGGCGCTCGCGCCGGATAAGCTTCTTTACTCGCTCGAGTACGCCGGTCGTGACTTGAAGCTCGTGAGGATGGCCGTGCCTCTCCGAGACACCGAGAACGAGAACTTGTTGGATTACCTGGAAGTTTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCTTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAAAATGTTTGTCCCAACGATGGTTTTCTAGAGCAGTTGAAACTGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAGTACTAGGTGAAAATCATTTATCAGGGTTGAGGATAGACAGTTCTAAATTTGGTGCAGATCCTGGCATGCCTGTCGAAATTTCTTCAGGGACAGAAGAAACCACTAAAGTAGAAAATAACCGGAGACCTACATATCGCTGTAGGAAATGCCGACGACTTGTTGCATTGCACGAACATGTCATAGATCATGTTCCTGGTGAGGGTGAGACAGCCTTTGGGTGGAACAAACGAAGAGGTGGTAACCCTTTCAACAAATCTAAAGAATCTGACTGTTCATCCATATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCATTGGAGGGAAAGCTGTCATGTGCTCATTGTGACGCTCGTTTGGGATACTTCACTTGGGCAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCAGCATTTCAACTCCACAAAAGCCGGATAGACATAAGCCCCATGTAA	1074	0.4935	MPYTVRENLSIGNIGDAAGILQNDTVHSVTHILSVLSSASISFFTEWRPSLSIPAKEITKVHVADAGASAAKSALAPDKLLYSLEYAGRDLKLVRMAVPLRDTENENLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSVEDALESLRQSCENVCPNDGFLEQLKLFEGMGFKVDHSSPIYKRFRLKVLGENHLSGLRIDSSKFGADPGMPVEISSGTEETTKVENNRRPTYRCRKCRRLVALHEHVIDHVPGEGETAFGWNKRRGGNPFNKSKESDCSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFTWAGIQCSCGSWITPAFQLHKSRIDISPM	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium840g00028	357	Pfam	Dual specificity phosphatase, catalytic domain	94	183	IPR000340	GO:0008138\|GO:0016311
	Vium840g00028	357	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	106	164	IPR000387	GO:0016311\|GO:0016791
	Vium840g00028	357	CDD	DSP_DUSP12	5	190	-	-
	Vium840g00028	357	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	188	IPR020422	GO:0006470\|GO:0008138
	Vium840g00028	357	Gene3D	Protein tyrosine phosphatase superfamily	4	205	IPR029021	-
	Vium840g00028	357	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	91	186	IPR029021	-
	Vium840g00028	357	PIRSF	DUSP12	4	42	IPR016278	GO:0006470\|GO:0008138
	Vium840g00028	357	PIRSF	DUSP12	84	357	IPR016278	GO:0006470\|GO:0008138
	Vium840g00028	357	SMART	dsp_5	1	185	IPR020422	GO:0006470\|GO:0008138
	Vium840g00028	357	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	353	-	-
	Vium840g00028	357	ProSitePatterns	Tyrosine specific protein phosphatases active site.	130	140	IPR016130	GO:0016311\|GO:0016791
	Vium840g00028	357	FunFam	Dual specificity protein phosphatase 12-like	4	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium840g00028	Vium-Chr840	164847	167877	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium840g00028	93	183	Protein tyrosine phosphatase (PTP) family	AT3G06110	36.957	5.80e-15	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium840g00028	K14819		-	gmx:100804683	625.165