Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00009 ATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1107 0.467 MKSNSQALGADIQFGALNKTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00009 368 Pfam Basic region leucine zipper 79 125 IPR004827 GO:0003700|GO:0006355
Vium840g00009 368 MobiDBLite consensus disorder prediction 54 85 - -
Vium840g00009 368 SMART brlzneu 79 142 IPR004827 GO:0003700|GO:0006355
Vium840g00009 368 MobiDBLite consensus disorder prediction 27 85 - -
Vium840g00009 368 MobiDBLite consensus disorder prediction 27 53 - -
Vium840g00009 368 SUPERFAMILY Leucine zipper domain 83 126 IPR046347 GO:0003700|GO:0006355
Vium840g00009 368 Gene3D - 82 134 - -
Vium840g00009 368 PANTHER TRANSCRIPTION FACTOR TGA9 38 368 - -
Vium840g00009 368 Pfam Seed dormancy control 165 241 IPR025422 GO:0006351|GO:0043565
Vium840g00009 368 Coils Coil 102 129 - -
Vium840g00009 368 ProSiteProfiles DOG1 domain profile. 148 365 IPR025422 GO:0006351|GO:0043565
Vium840g00009 368 FunFam BZIP family transcription factor 82 131 - -
Vium840g00009 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Vium840g00009 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 125 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00009 Vium-Chr840 19244 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00009 46 368 bZIP Transcription Factor Family AT3G12250 75.227 3.38e-175 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00009 DOG1 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00009 K14431 - gmx:778136 637.876