Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00008 ATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1158 0.462 MKSNSQALGADIQFGALNKSIITSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00008 385 ProSiteProfiles DOG1 domain profile. 165 382 IPR025422 GO:0006351|GO:0043565
Vium840g00008 385 Pfam Basic region leucine zipper 96 142 IPR004827 GO:0003700|GO:0006355
Vium840g00008 385 FunFam BZIP family transcription factor 99 148 - -
Vium840g00008 385 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 103 118 IPR004827 GO:0003700|GO:0006355
Vium840g00008 385 Pfam Seed dormancy control 182 258 IPR025422 GO:0006351|GO:0043565
Vium840g00008 385 SMART brlzneu 96 159 IPR004827 GO:0003700|GO:0006355
Vium840g00008 385 Coils Coil 119 146 - -
Vium840g00008 385 SUPERFAMILY Leucine zipper domain 100 143 IPR046347 GO:0003700|GO:0006355
Vium840g00008 385 MobiDBLite consensus disorder prediction 71 102 - -
Vium840g00008 385 MobiDBLite consensus disorder prediction 44 102 - -
Vium840g00008 385 MobiDBLite consensus disorder prediction 44 70 - -
Vium840g00008 385 PANTHER TRANSCRIPTION FACTOR TGA9 54 385 - -
Vium840g00008 385 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 98 142 IPR004827 GO:0003700|GO:0006355
Vium840g00008 385 Gene3D - 99 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00008 Vium-Chr840 19244 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00008 63 385 bZIP Transcription Factor Family AT3G12250 75.227 4.76e-175 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00008 DOG1 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00008 K14431 - gmx:778136 671.774