Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00007 ATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGGTGCAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1164 0.4631 MKSNSQALGADIQFGALNKVQSIITSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00007 387 Gene3D - 101 153 - -
Vium840g00007 387 MobiDBLite consensus disorder prediction 73 104 - -
Vium840g00007 387 SMART brlzneu 98 161 IPR004827 GO:0003700|GO:0006355
Vium840g00007 387 PANTHER TRANSCRIPTION FACTOR TGA9 56 387 - -
Vium840g00007 387 MobiDBLite consensus disorder prediction 46 72 - -
Vium840g00007 387 MobiDBLite consensus disorder prediction 46 104 - -
Vium840g00007 387 Pfam Seed dormancy control 184 260 IPR025422 GO:0006351|GO:0043565
Vium840g00007 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 100 144 IPR004827 GO:0003700|GO:0006355
Vium840g00007 387 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 105 120 IPR004827 GO:0003700|GO:0006355
Vium840g00007 387 Pfam Basic region leucine zipper 98 144 IPR004827 GO:0003700|GO:0006355
Vium840g00007 387 ProSiteProfiles DOG1 domain profile. 167 384 IPR025422 GO:0006351|GO:0043565
Vium840g00007 387 SUPERFAMILY Leucine zipper domain 102 145 IPR046347 GO:0003700|GO:0006355
Vium840g00007 387 FunFam BZIP family transcription factor 101 150 - -
Vium840g00007 387 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00007 Vium-Chr840 19243 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00007 65 387 bZIP Transcription Factor Family AT3G12250 75.227 2.24e-175 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00007 DOG1 3.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00007 K14431 - gmx:778136 679.093