Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00006 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTCGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGGTGCAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1389 0.4615 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKVQSIITSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00006 462 SMART brlzneu 173 236 IPR004827 GO:0003700|GO:0006355
Vium840g00006 462 Pfam Seed dormancy control 260 335 IPR025422 GO:0006351|GO:0043565
Vium840g00006 462 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Vium840g00006 462 MobiDBLite consensus disorder prediction 121 179 - -
Vium840g00006 462 MobiDBLite consensus disorder prediction 121 147 - -
Vium840g00006 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Vium840g00006 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Vium840g00006 462 PANTHER TRANSCRIPTION FACTOR TGA9 129 462 - -
Vium840g00006 462 CDD bZIP_HBP1b-like 177 229 - -
Vium840g00006 462 Pfam Basic region leucine zipper 173 219 IPR004827 GO:0003700|GO:0006355
Vium840g00006 462 MobiDBLite consensus disorder prediction 148 179 - -
Vium840g00006 462 Coils Coil 196 223 - -
Vium840g00006 462 ProSiteProfiles DOG1 domain profile. 242 459 IPR025422 GO:0006351|GO:0043565
Vium840g00006 462 FunFam BZIP family transcription factor 176 225 - -
Vium840g00006 462 Gene3D - 176 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00006 Vium-Chr840 19243 25409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00006 140 462 bZIP Transcription Factor Family AT3G12250 75.227 8.97e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00006 DOG1 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00006 K14431 - gmx:778136 805.053