Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00004 ATGCCAAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTCGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGGTGCAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1326 0.4608 MPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKVQSIITSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00004 441 FunFam BZIP family transcription factor 155 204 - -
Vium840g00004 441 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 159 174 IPR004827 GO:0003700|GO:0006355
Vium840g00004 441 Pfam Basic region leucine zipper 152 198 IPR004827 GO:0003700|GO:0006355
Vium840g00004 441 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 198 IPR004827 GO:0003700|GO:0006355
Vium840g00004 441 Coils Coil 175 202 - -
Vium840g00004 441 ProSiteProfiles DOG1 domain profile. 221 438 IPR025422 GO:0006351|GO:0043565
Vium840g00004 441 PANTHER TRANSCRIPTION FACTOR TGA9 108 441 - -
Vium840g00004 441 Pfam Seed dormancy control 239 314 IPR025422 GO:0006351|GO:0043565
Vium840g00004 441 SMART brlzneu 152 215 IPR004827 GO:0003700|GO:0006355
Vium840g00004 441 MobiDBLite consensus disorder prediction 100 126 - -
Vium840g00004 441 MobiDBLite consensus disorder prediction 100 158 - -
Vium840g00004 441 SUPERFAMILY Leucine zipper domain 156 199 IPR046347 GO:0003700|GO:0006355
Vium840g00004 441 Gene3D - 155 207 - -
Vium840g00004 441 MobiDBLite consensus disorder prediction 127 158 - -
Vium840g00004 441 CDD bZIP_HBP1b-like 156 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00004 Vium-Chr840 19099 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00004 119 441 bZIP Transcription Factor Family AT3G12250 75.227 7.15e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00004 DOG1 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00004 K14431 - gmx:778136 770.385