Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00003 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTCGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1332 0.4647 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00003 443 Coils Coil 177 204 - -
Vium840g00003 443 MobiDBLite consensus disorder prediction 103 160 - -
Vium840g00003 443 MobiDBLite consensus disorder prediction 103 128 - -
Vium840g00003 443 Pfam Seed dormancy control 241 316 IPR025422 GO:0006351|GO:0043565
Vium840g00003 443 ProSiteProfiles DOG1 domain profile. 223 440 IPR025422 GO:0006351|GO:0043565
Vium840g00003 443 MobiDBLite consensus disorder prediction 129 160 - -
Vium840g00003 443 CDD bZIP_HBP1b-like 158 210 - -
Vium840g00003 443 MobiDBLite consensus disorder prediction 1 19 - -
Vium840g00003 443 FunFam BZIP family transcription factor 157 206 - -
Vium840g00003 443 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 161 176 IPR004827 GO:0003700|GO:0006355
Vium840g00003 443 Gene3D - 157 209 - -
Vium840g00003 443 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 200 IPR004827 GO:0003700|GO:0006355
Vium840g00003 443 MobiDBLite consensus disorder prediction 1 38 - -
Vium840g00003 443 SMART brlzneu 154 217 IPR004827 GO:0003700|GO:0006355
Vium840g00003 443 Pfam Basic region leucine zipper 154 200 IPR004827 GO:0003700|GO:0006355
Vium840g00003 443 SUPERFAMILY Leucine zipper domain 158 201 IPR046347 GO:0003700|GO:0006355
Vium840g00003 443 PANTHER TRANSCRIPTION FACTOR TGA9 110 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00003 Vium-Chr840 19081 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00003 121 443 bZIP Transcription Factor Family AT3G12250 75.227 1.23e-174 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00003 DOG1 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00003 K14431 - gmx:778136 763.837