Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium840g00002 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTCGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGTCAATTATAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAAGACGCACAACCGAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCACGATGGCTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTGGATAACTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTATTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAGTTGGTGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAACTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTTTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTTGCGATTAGCGACTATTTCTCGCGGCTGCGAGCCCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1383 0.4606 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIITSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium840g00002 460 Pfam Basic region leucine zipper 171 217 IPR004827 GO:0003700|GO:0006355
Vium840g00002 460 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Vium840g00002 460 CDD bZIP_HBP1b-like 175 227 - -
Vium840g00002 460 MobiDBLite consensus disorder prediction 146 177 - -
Vium840g00002 460 MobiDBLite consensus disorder prediction 1 32 - -
Vium840g00002 460 Coils Coil 194 221 - -
Vium840g00002 460 FunFam BZIP family transcription factor 174 223 - -
Vium840g00002 460 MobiDBLite consensus disorder prediction 1 19 - -
Vium840g00002 460 PANTHER TRANSCRIPTION FACTOR TGA9 127 460 - -
Vium840g00002 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Vium840g00002 460 ProSiteProfiles DOG1 domain profile. 240 457 IPR025422 GO:0006351|GO:0043565
Vium840g00002 460 SMART brlzneu 171 234 IPR004827 GO:0003700|GO:0006355
Vium840g00002 460 MobiDBLite consensus disorder prediction 119 145 - -
Vium840g00002 460 MobiDBLite consensus disorder prediction 119 177 - -
Vium840g00002 460 Gene3D - 174 226 - -
Vium840g00002 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Vium840g00002 460 Pfam Seed dormancy control 258 333 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium840g00002 Vium-Chr840 19081 25409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium840g00002 138 460 bZIP Transcription Factor Family AT3G12250 75.227 9.50e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium840g00002 DOG1 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium840g00002 K14431 - gmx:778136 797.734