Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8408g00019 ATGGACAGGGTCATCGGCGGCAAGTTTAAGACTGGTCGGAAAATCGGAAGCGGTTCATTTGGAGAAATTTATATAGCCTCAAATATGGACACCTCGGAGATTGTTGCCATCAAGATGGAAAACAAGAGAACCAAACATCCACAACTATTGTATGAGGCAAAGTTATATAACATTCTTCAAGGAGGAAGTGGTGTTCCATGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGTTTTAGTTATTGATCTTCTGGGACGGAGTCTTGAAGACTTTTTTGTCTATTGCGGGAGGAAATTGTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACCTGCATTCCAAGGGATTTTTGCATAGAGATATCAAACCAGATAATTTTCTTATGGGTCTTGGGAAGAAATCAAATCAGGTTTATATTATTGATTTCGGACTAGCGAAAAGATATAGGGATCCAAACACAAATAAGCACATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCTCGTTACGCAAGTTGCAACACTCACATGGGAATTGAACAAAGTCGCCGTGATGATTTGGAGTCTCTTGGCTATGTTCTAATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCCACCAAAAAGGAAAAATATGACAATATCTGTGACAAGAAGTTATCAACTCCTATTGAGGTGCTCTGCAAGTCATTTCCTGTGGAGTTTGCTACATACTTTCATTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCGCCTGTTTAGTGATTTGTTCAAACGAGAAGGATATAATTCCGACTATATATATGACTGGACCATCCTCAAATATCAGCAGTCTCAACAGACAAAGAAACAAAATCAATCATCTTCTTCAGCTGCATTGCCTAGCAATCTAGAACCAGCAGTTGTGGAAAACCCCAAAGGAGCCAATGATTCAACTCATGTTAATGTAACAAATATGTTGGCTAGTCTTGAACTCCCAAGTGCACGTGCGCAGCCTAAGCCATCTAATGCTCGGAATCTGGATGCCAAGATTCGGACTGAGAAACATGGTGTGAACAATATTCCACCTAGTTCCTCTGCCTTGCCCAAATCCTCTACATGA 1161 0.4014 MDRVIGGKFKTGRKIGSGSFGEIYIASNMDTSEIVAIKMENKRTKHPQLLYEAKLYNILQGGSGVPCMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKLSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKSNQVYIIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDNICDKKLSTPIEVLCKSFPVEFATYFHYCQSLTFDQHPDYGYLKRLFSDLFKREGYNSDYIYDWTILKYQQSQQTKKQNQSSSSAALPSNLEPAVVENPKGANDSTHVNVTNMLASLELPSARAQPKPSNARNLDAKIRTEKHGVNNIPPSSSALPKSST 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8408g00019 386 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8408g00019 386 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8408g00019 386 MobiDBLite consensus disorder prediction 371 386 - -
Vium8408g00019 386 MobiDBLite consensus disorder prediction 343 386 - -
Vium8408g00019 386 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vium8408g00019 386 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8408g00019 386 PANTHER CASEIN KINASE-RELATED 13 326 - -
Vium8408g00019 386 FunFam Casein kinase I isoform delta-like 1 339 - -
Vium8408g00019 386 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Vium8408g00019 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium8408g00019 386 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8408g00019 Vium-Chr8408 124347 131134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8408g00019 9 223 AGC Kinase Gene Family AT3G08720 26.484 1.31e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium8408g00019 Pkinase 1.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8408g00019 K08960 - gmx:100792736 691.034