Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8408g00017 ATGGCATCATCCTTAATGTTACCAGCTGCTTCAATGCTGAGACCATCTACCACTTCATCGTCTACTTCACGAAGACTTGCTCTCTTTCACCTTGTCACCACTGGTGCTATTGCTCTCCCACAATGTAAGCTGTTTGGTGCAAAAGGATCAGATTTGTTAAAAGTAGCAGAGGCTATTGCTGCGGAAAATATAGTCCAGCCAGAGAAAATTTTGTTTGATTGGGTTAAGAATGACAACAGAAGATTTCTCCATGTTGTGTACCGTGTTGGGGACTTGGAGAAGACTATAAAATTCTACACTGAATGCCTTGGCATGAAGCTTTTGAGGAAACGTGATATACCTGAAGATAGATATTCTAATGCTTTTCTTGGATATGGGCCCGAAGATTCTAATTTTACAGTTGAACTTACTTACAATTATGGAGTGGATAACTATGACATTGGAAGTGGCTTTGGTCATTTTGGTGTTGCAGTTGAAGATATTTACAAGAGAGTAGATCTAATAAAGGCAAAAGGAGGAAAGGTTACAAGGGAACCAGGGCCTGTTAGAGATGGCAGTTCGGTAATTGCTTTCATTGAAGATCCTGATGGTTATGAGTTTGAACTTTTGGAGAGAAGACCTACATCTGAACCTCTATGCCAAGTGATGCTTCGAGTAGGCGATCTCGATCGTGCCATAGCCTTCTACCAAAAAGCTGTCGGAATGAAACTTCTCCGCAAGAAGGACAATCCTGAGGACAAGTACACAGTAGCCTTTTTGGGCTATGGTCCTGAAGATAAGAACGCTGTTCTAGAACTAACATATAACTATGGCGTCACTGATTACGATAAAGGAAATGGTTACGCTCAGATTGCAATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTATGTGGGGGGAAGATTATCCGTGAACCTGGGCCCTTGTCTGGTATCAACACCAAGATTGTAGCTTGTTTGGACCCTGATGGTTGGAAATTGGTATTTGTTGATAATGTTGATTTTCTGAAGGAATTAGAGTGA 1032 0.4109 MASSLMLPAASMLRPSTTSSSTSRRLALFHLVTTGAIALPQCKLFGAKGSDLLKVAEAIAAENIVQPEKILFDWVKNDNRRFLHVVYRVGDLEKTIKFYTECLGMKLLRKRDIPEDRYSNAFLGYGPEDSNFTVELTYNYGVDNYDIGSGFGHFGVAVEDIYKRVDLIKAKGGKVTREPGPVRDGSSVIAFIEDPDGYEFELLERRPTSEPLCQVMLRVGDLDRAIAFYQKAVGMKLLRKKDNPEDKYTVAFLGYGPEDKNAVLELTYNYGVTDYDKGNGYAQIAIGTNDVYKTAEAIKLCGGKIIREPGPLSGINTKIVACLDPDGWKLVFVDNVDFLKELE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8408g00017 343 Gene3D - 208 343 IPR029068 -
Vium8408g00017 343 NCBIfam lactoylglutathione lyase 212 335 IPR004361 GO:0004462|GO:0046872
Vium8408g00017 343 NCBIfam lactoylglutathione lyase 82 206 IPR004361 GO:0004462|GO:0046872
Vium8408g00017 343 ProSitePatterns Glyoxalase I signature 1. 84 105 IPR018146 GO:0004462|GO:0046872
Vium8408g00017 343 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 81 205 IPR037523 -
Vium8408g00017 343 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 211 335 IPR037523 -
Vium8408g00017 343 FunFam Lactoylglutathione lyase 208 343 - -
Vium8408g00017 343 Gene3D - 54 207 IPR029068 -
Vium8408g00017 343 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 214 331 IPR004360 -
Vium8408g00017 343 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 82 202 IPR004360 -
Vium8408g00017 343 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 80 207 IPR029068 -
Vium8408g00017 343 CDD GlxI_Ni 83 203 - -
Vium8408g00017 343 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 212 335 IPR029068 -
Vium8408g00017 343 PANTHER LACTOYLGLUTATHIONE LYASE 62 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8408g00017 Vium-Chr8408 116288 119795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8408g00017 212 334 Calmodulin-binding Proteins AT1G08110 27.703 3.28e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8408g00017 K01759 - gmx:100810908 637.106