Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8408g00016 ATGGCGAAAATCGCTCTTGGAAGCACCAGCGAGGTCACTCAGCCAGATTGCATTCAAGCCCTCGTCGTTGAATTCATCGCCACCTTCCTCTTCGTCTTTGTTGGCGTTGCTTCTTCCATGCTCACTGAGAAGCTCGGTGGGGATGCATTAGTAGGGTTGTTTGTTGTGGCCGTGGCACATGCACTGGTGGTGGCCGTCATGATCTCCGCTGCACACATCTCCGGTGGCCACCTGAACCCCGCCGTGACTATTGGTCTCCTTGCCGGCGGTCACATCACCGTGTTCCGTTCCATCCTCTATTGGATTGATCAGTTAGTCGCATCTGCGGCAGCTTCTTATCTCCTTTACTTCCTCTCTGGAGGACAGACAACTCCGGTTCATACGCTGGCCGCCGGAATAGGGTACGGTCAAGGGGTAATTTGGGAGATTGTGTTGACCTTTTCTTTGCTGTTCACTGTCTACGCCACCATGGTAGATCCAAAGAAGGGACCACTTGCTGGGCTTGGCCCGACTCTTGTTGGGTTTGTCGTGGGGGCCAATATCCTCGCTGGTGGAGCTTACTCCGCCGCTTCTATGAACCCAGCGCGGTCTTTTGGGCCTGCCTTGGTTACTGGCAACTGGACCGATCATTGGGTTTACTGGGTTGGGCCTCTCGTTGGTGGTGGGCTTGCCGGTTTCATCTATGAAACTTTCTTCATTGATCGATCTCACGTTCCTCTTCCTCGTGATGAAGAATCCTAA 741 0.5358 MAKIALGSTSEVTQPDCIQALVVEFIATFLFVFVGVASSMLTEKLGGDALVGLFVVAVAHALVVAVMISAAHISGGHLNPAVTIGLLAGGHITVFRSILYWIDQLVASAAASYLLYFLSGGQTTPVHTLAAGIGYGQGVIWEIVLTFSLLFTVYATMVDPKKGPLAGLGPTLVGFVVGANILAGGAYSAASMNPARSFGPALVTGNWTDHWVYWVGPLVGGGLAGFIYETFFIDRSHVPLPRDEES 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8408g00016 246 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 FunFam Probable aquaporin TIP1-1 2 244 - -
Vium8408g00016 246 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
Vium8408g00016 246 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Vium8408g00016 246 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium8408g00016 246 PANTHER AQUAPORIN-8 4 237 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8408g00016 Vium-Chr8408 113747 114856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8408g00016 1 245 Major Intrinsic Protein MIP AT2G25810 75.510 7.04e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8408g00016 K09873 - gmx:100793258 437.958